HsaINT1014646 @ hg38
Intron Retention
Gene
ENSG00000147533 | GOLGA7
Description
golgin A7 [Source:HGNC Symbol;Acc:HGNC:24876]
Coordinates
chr8:41490562-41490965:+
Coord C1 exon
chr8:41490562-41490617
Coord A exon
chr8:41490618-41490832
Coord C2 exon
chr8:41490833-41490965
Length
215 bp
Sequences
Splice sites
5' ss Seq
CGGGTTTGT
5' ss Score
3.45
3' ss Seq
GTGTTCCCCCGACCCCGCAGCGC
3' ss Score
9.3
Exon sequences
Seq C1 exon
AGGACGTAAGTGACGGCGAAGGCGGTGCGACAGCAGCTGGAGGGCAGAGGAGGCGG
Seq A exon
GTTTGTGTTTCCCGGGCCGAACCGGGTTGTGGGGGGCGCGGGGCCTGGGCCAGGCGGCAGCTAAGGCCCGCGGTGACAGCATGGGTGAAGGGGAGCGGGGCAGAGGAGGCCTTGGGCTGTTTTCGGCGGCGGGTGGGGGCGAGGGGCTGGCGGGTCAGAGTCCCGGGTCCAGGCCGGGGCTCTGACTCGCGGTTGGTGTTCCCCCGACCCCGCAG
Seq C2 exon
CGCGGGGTGTCCTGTCCTCGCCATGAGGCCGCAGCAGGCGCCGGTGTCCGGAAAGGTGTTCATTCAGCGAGACTACAGCAGTGGCACACGCTGCCAGTTCCAGACCAAGTTCCCTGCGGAGCTGGAGAACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147533:ENST00000405786:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.033
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF102564=Erf4=PU(22.8=70.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCTGGAGGGCAGAG
R:
GGTTCTCCAGCTCCGCAG
Band lengths:
156-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains