MmuINT1019936 @ mm10
Intron Retention
Gene
ENSMUSG00000015341 | Golga7
Description
golgi autoantigen, golgin subfamily a, 7 [Source:MGI Symbol;Acc:MGI:1931029]
Coordinates
chr8:23256674-23257074:-
Coord C1 exon
chr8:23257020-23257074
Coord A exon
chr8:23256807-23257019
Coord C2 exon
chr8:23256674-23256806
Length
213 bp
Sequences
Splice sites
5' ss Seq
CGGGTTTGT
5' ss Score
3.45
3' ss Seq
TGTCTTGCCCGAACTCGCAGAGC
3' ss Score
7.57
Exon sequences
Seq C1 exon
GGACGTAAGCGGCGACGGAGGTGGCGCGACAGCTGCTGGAGGGCCGAGGAGGCGG
Seq A exon
GTTTGTGTTTCCAGGGCCGAACCAGGATGTGGGGGGGCGCGGGTCCTGGGCTTGGGTAGCTTGGAGTCCCTCGGCTACAGCCATGAGTGAAGGGGATCGGCGAGGGGGGAGGCCTGGGGCGTCTTTGGGCGGTGGGTGGCTCCGAAGGGCTGGCGGGCCGGAGAGCCGGCTCTAGGCCGGCCATCTGACCCCGTGTCTTGCCCGAACTCGCAG
Seq C2 exon
AGCGGCGGGTCCTGTCCTCGCCATGAGGCCGCAGCAGGCACCGGTGTCCGGGAAGGTGTTCATTCAGCGAGACTACAGCAGCGGCACGCGCTGCCAGTTCCAGACCAAGTTCCCCGCGGAGCTGGAGAACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015341:ENSMUST00000051094:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.039
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF102564=Erf4=PU(22.6=70.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCTGCTGGAGGGCC
R:
CTGTTCTCCAGCTCCGCG
Band lengths:
160-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types