HsaINT1015848 @ hg38
Intron Retention
Gene
ENSG00000233101 | HOXB-AS3
Description
HOXB cluster antisense RNA 3 [Source:HGNC Symbol;Acc:HGNC:40283]
Coordinates
chr17:48603927-48606414:+
Coord C1 exon
chr17:48603927-48604046
Coord A exon
chr17:48604047-48606131
Coord C2 exon
chr17:48606132-48606414
Length
2085 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGA
5' ss Score
3.01
3' ss Seq
CCCCCTCTCTCTCTGTGCAGCGG
3' ss Score
13.13
Exon sequences
Seq C1 exon
CCGTTTCCTCTCCCTCGCCGGCCTCGGCGGAGATTCCAGGCCCTATAGAAACCAGGACGTCCCTTAGCGCCACCGCCTCACATGCCAGTGCTGCCGGGAACCCAGCGATATCCGCACCAG
Seq A exon
GCAAGAGAACTGCGCTGGGGCAATAGCCAGAGGCCGAGACAAGGGAGGGATGGCAGGAGGGGGAGGGGCAAGCCCGCGGAGGCCAGAACCACTGGCTTCTTTGGGTGCCACTGAAGCCCAGATACCCCCCATCCTCTCTTTCGCACCCCCCTTGCTTGAGTCTCTCCTCCAAGCTTAAAAAGGCGACTTAGAGCTGGTCTCCTGGCCCTCTTTTGATTCCTCTTCCCGCTTTCCCTGCCTTGGCTCCCCCTCCAGGAAGCAGCCACCCATATCTCCACCACTGAATTTCCTGGGAAGCTTCTCCCTGCAGCGCCCAGAGGTGGGGTTCAGCCCCGTCTTGGAACGGGGGAGGAGGGAGAAAAACCCAAGCCCCACCCCCACCCTACAAAAGCGATGCAAAAGAACAAGAAGAAAATTGTAGAATCTCCCTTACCTTTGCAGACCTTGGGATTTTTTCCCCCTCCGGATTTAAAGGAATGGGTGGGGAGGAAGGAAGGAGTATTCAGTTTCTTCTTCAGCTTCCAGATAATATTGTCCCAACGTGAGAGCCGTTGCTTCCCCTTCTCTGACTTGGGAGAGAGGGTGTTTCATTTTTCTGACATTTGCATAGAAAATGGAGTAAGTTCTGGCTTTGAAAAATAGTATCGGGCTGCAGTCCTGGGCAGATTGTCCATTTACCCTCCATGGTGACTAAAATCCCAGATCAGTGAGCAAATTAACTTAGGAATCAAAATTATTTTTGGTTCTCTCTTTGTGTAATTCCCACCCCTCCTTCTCTCCCTCTCCCTCTCGCGCTCTCTCTCTTTTCTCCTCACCCCCCTCTCTCGTCCTCTCTCTCTTTTGCTCTATCGAGCTGATACTGAAGTACAAAAATATCAAGAGGCTGGAGCCCTGAAGGACGACAGTGCTCCGACCTAGGTGTGGTGTCCAAAAGAATGCTGCATTATAACCACCAGGGAAATGATAAAAAGTTCATGTTCACGATCGCCCGGCCACATGACCGGCGCCGGCCAATCGCTGGATTCAACCACTCATAAACTTCTATCACAAAGTTGTAAATTTTCATAAAACAACAAGGAATTTATTGCATTTCTTCATGGCTGCTCCACCAGCAACCCTTTTCTCAGTCGCCATCTTCTTTTCTTCTCCTTCTCTCTTTTTGGGGAAACCCCAATCTGAGAAGGGGTGAGATTTGGGGGGGCAGGAAATCAGAGTGCAAAAGCCATAACGGTACAGCTGGGAAGGGGGTTCTTTTCCGAACCTCCCCACTCTCCACAGGAGCTCTGCTCCCTCTTCTAGTAAAGGTCTACCCCAAATCCTCTGCATAGGGACTGTTCTGAGACAATTTTGGGGTGAGGCAGGAGCAGGAAACGGTGTCTAGAGTTGCCACCTGCATAAGGGCAAAATGAAAGCTTCAGTGTCCCCTCTCCCCCTCTGAACTGGCCCCCTCATTCCTAGCCCTGTAGACAGCAGGACCCCCACCTGTGAGGCTTGCAGCATTGCAGGCGTGGGGGCCTTAGATTCCCTAGGGCTTAGTTTTTGCCCCAGGAGGAAAAGTGGCCTGGATGGGGGCCAAGGCAGATAGTCTGACAACCTGATTCTCGCCTCCGGAACCCAGAAACTGGGGGAGGGTAAAGCCGGATCCTGGCTTCTCCCGCCCAAATGCAGGCAAGTCCAGGTTTCCTATGACAGCTCCATGCGCTCTCCAGGGCGTTACGTGGTCATTAATGGGGGAAACTGCAGGTTTAAAAGCATTTTACATACAAATTCAAATTCAACAGATTATCCTAAAACCAACCCTCTTCCCTCTTTCTATCCAAAGTCTGTTTAAATTTAAACAATCCAGAGTTTATAATCGAATAAATGCTAAAAATCAATTCAGCGGGTCTAGCCGCATAGACACCATCCTCCAAGTTTTGGTCCTGCAATCAGCGGATGTTTGGAAGCAAAAAATAAAATAAAAATTCAGCCCAGGTTTTTCAGGTCCCCTGAAATAACCCCGTATTTCAAGTTGACCTACCAATGCCCGAATTCTGGAAACGAAATAACCTCCCCCAACATTTTCCCCCCTCTCTCTCTGTGCAG
Seq C2 exon
CGGAGAAGGTTCCAGGCTGCCGGCGGCGGCGCAGAGAGCGGGAAGAGAGGCTCGGAGGAAGCCCCGGGCGTGGCGTGGTCAGGCTCCGAGAGCGGCCGGGATGCGGCCACACCGGCCTGGTAAACTCGCACCTCTTAGGATCTTGCTCCCGGACTCATTCCCTTCCCCACCCCCTATTTTAAAGTTTTATTTGGGTCGTCTGTATCAATTTAGAACGAGATAAATTAAGACAAAGAAAGTAAAATAAATCGAAATAAAATATAGGAATAGCTCTTGGCGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000233101:ENST00000494420:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains