MmuINT1020847 @ mm10
Intron Retention
Gene
ENSMUSG00000085645 | Hoxb5os
Description
homeobox B5 and homeobox B6, opposite strand [Source:MGI Symbol;Acc:MGI:1922645]
Coordinates
chr11:96291024-96293554:-
Coord C1 exon
chr11:96293375-96293554
Coord A exon
chr11:96291266-96293374
Coord C2 exon
chr11:96291024-96291265
Length
2109 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TGTGTGTGTGTGCCCCTCAGAAG
3' ss Score
8.31
Exon sequences
Seq C1 exon
ACGCCTCTTCGCCCTAGGCTGGCCTCTGCGGAGATTCCAGGCCCCACAGAGACCAGGACTTCCCTCAGCGCCACCGCCCCTCGTGCCAATGCAGCCGGGAAATCGCCATTACCCACACTGGGCAAGAGAAACCGCACGGGGGCAATCGGAGAGGCCAGGAAAAGGGAGAGATGGAGGGAG
Seq A exon
GTGAGCACAAACCCACAAGGGCCAGAGCGACTGGCCAGCGTGGCTGTAGCCCAGACACCCCCCACCCTCGCTTTTGCAGACCCCTCGCTGGAGATCTCTCCCAGCTAAAAAAGCAACATAAAACCGGCCTCATAGGCCCCTTTCCATCCCTCCTCCCCATCTTCCCTGCAGCCGGTCCCCCTCCAGGAAGCAGCCACCCCTGTCTCTACTACAGAATTTCCTGGGAAGCCTCTCCCAGCAGCGCCCAGAGGTGGGGTTCAACCCTGTCTTGAAATGGGGGGAGGAGGAGGGAGAAAAATCTAAGCCCCACCCCCTGCAAGAAAAGGATGCAAAAGAATAAGAATTGTAGAATCTTCCTTACCTTTGCAGAACTTGGGGGATTTTGCCCTCCTCCGGATTCAAAAGGATGTGGAGGGAGGGATAAAGGAGCGTTCGGTATCTTCTTCAGCTTCCAGATAATATTGTCCCAACCTGAGAGCCGTCGTTTCCCCTTCTCAGACTTGAGAGAGAGGTTGTTTCGCTTTTCTGATATTTGCATAGAAAATGGAGTAAGTTCTGGCTTTGAAAAATGATATCAGGCTGCAGTCCTGGGCAGATTGTCCATTTAGCCTTCATGATGACTAAAAATCCCAGATCAGCAAGTAAATTAAGAATCAAAATTATTTTAGGTTCTCTCTTTTGTGTAATTCCCACCCCTCCTTCCCTCTCTCAGCCTTCTCTCCTCTCCCCCCTCTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTATCGAGCTGATATTGAAGTATAAAAATATCAAGAGGCTGGAGCCCTGAAGGACGGTAGTGCTCCGACCTAGGTGTGGTGTCCAAAAGAATGCTGCATTATAACCACCAGGGAAATGATAAAAAGTTCATGTTCACGATCGCCCGGCCACATGACCGGCGCCGGCCAATCGCTGGATTCAACCACTCATAAACTTCTATCACAAAGTTGTAAATTTTCATAAAACAACAAGGAATTTATTGCATTTCTTCATGGCTGCTCCACCAGCAACCCTTTTCTCCGTCGCCATCTTCTTTTCTTCCCCTTCTCTTTTTAGGGAAACCCCAATCTGAGACAGCTGAGATTTGGGGTGCAAGAATTCAGGGTGGAGAAGCCATAATGGTTCAGCTAGAACCGGGGTTTTCTCTGGAACCTCCACATTTTTTCTCAAGAGCTCTGTCTGTCTTTTATAGTAAAAGTCCCCACCCCCACCCCCAGTCCTCCACAAGGGAATGTTCTGAGAGGTGAGGCCAAAGCAGCAGCCTGTGTTAGGAGCTGCTATCTGCTTTGTGACAAAAAGAAAGCTCCTGTACCCCCTCTCTTCATCTGAATACCCCACATTCCTAGCCCTAGAGACTGTGGGGTTCCCCCACCTGTGCGGTTTGCAGCATTGCAGGTGTGGTGTGGGGGTGGTGGGCGTCAGTCCACAGGGTCTAGTTTTTGCCTCGGGAGGGAAGGTGTCCTGGATAGGGGCCAAGCTCGATACTCTAACAAGCAGATTCTCCACCTCAGCACCTCAGAAACTGGGGTGGGGGGGAGGGAGAAGACAGATCACTCCCGCCCCAACGCCTGCTTTCGGGACCAGGTTCCCCTGTGCTCGCCAGGGGTTGCAGCGGTCAGTTCTGGGGAAGCCGCAGGTTTTAAGGGCTTTTTCTTACAAATTGAAGCTGCGGGTTTTAAGGGCTGTCTCTTAGAAATTCAAATTAAGCAGATTTTTTCCGGAAACCAATCACCTTTTTCAAGCCCTTTTAGTTTAAGATAACCTTCTTTAGACAACTGAGGGTTTGTAAACGAATAAATATTAAAAACCAGTACCCCATGTCTAGGTGAAAAGACACTGTCGTTTAGGTTTTTCAGCGATGAAGGATTTACGAAATCCTTGATTTTATTTTAACAATAACTCACTCCGTTTTCCTAGGCTTTCTTTAAAAAAACAAAAACTACATTTTAGGTTGAGTTTCTGGTAACCAAACGCAGAAAACGAAATAATCCCCTTTAAAAAAAACATATTTTTCTCTCCCTCCCCCTCCTGTGTGTGTGTGTGCCCCTCAG
Seq C2 exon
AAGGTTCCAGGTTGGCCGTACTCAGGAGCAGGCCGAACGGCCCAGAGGAAGCCCTGGCGTCCGGTGCTGCCAGGCTCACTGCGGACGCACCCCAGCCCGGTAAACTCACTGTCGCTCGCCGGGACTGGTTTCCCTTCAATTTAAAAATTTCATGTGGATCGCCCATGCCAATTTAGAATGAAATAGATTTAAATACATAAAGTAAAAATAAATTGAAATAAAAGCAAGGCATCTGATGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000085645:ENSMUST00000150698:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types