MmuALTA1000284-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000000690 | Hoxb6
Description
homeobox B6 [Source:MGI Symbol;Acc:MGI:96187]
Coordinates
chr11:96292476-96299591:+
Coord C1 exon
chr11:96292476-96293013
Coord A exon
NA
Coord C2 exon
chr11:96299099-96299591
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTCGGCTATACTACTAATAGGCG
3' ss Score
3.37
Exon sequences
Seq C1 exon
GCACTACCGTCCTTCAGGGCTCCAGCCTCTTGATATTTTTATACTTCAATATCAGCTCGATAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAGAGGGGGGAGAGGAGAGAAGGCTGAGAGAGGGAAGGAGGGGTGGGAATTACACAAAAGAGAGAACCTAAAATAATTTTGATTCTTAATTTACTTGCTGATCTGGGATTTTTAGTCATCATGAAGGCTAAATGGACAATCTGCCCAGGACTGCAGCCTGATATCATTTTTCAAAGCCAGAACTTACTCCATTTTCTATGCAAATATCAGAAAAGCGAAACAACCTCTCTCTCAAGTCTGAGAAGGGGAAACGACGGCTCTCAGGTTGGGACAATATTATCTGGAAGCTGAAGAAGATACCGAACGCTCCTTTATCCCTCCCTCCACATCCTTTTGAATCCGGAGGAGGGCAAAATCCCCCAAGTTCTGCAAAG
Seq A exon
NA
Seq C2 exon
GCGCGGCGCTCGGACTATAAAACACAACAAATCATAAACCCGGCGGAGCAGCAGCGGCCTCGCGCGCCTCCCCTCCCGATGAGTTCCTATTTCGTGAACTCCACCTTCCCCGTCACTCTGGCCAGCGGGCAGGAGTCCTTCCTGGGCCAGCTGCCGCTCTACTCGTCTGGCTATGCGGACCCGCTGCGGCACTACCCCGCGCCTTATGGGCCGGGACCCGGCCAGGACAAGGGCTTTGCGGCGTCCTCCTATTACCCACCAGCCGGCGGCGGCTACGGCCGGGCGGCGCCCTGTGATTATGGGCCGGCGCCTGCCTTCTACCGGGAGAAGGACGCGGCCTGCGCTCTCTCCGGCGCCGACGAGCCGCCCCCGTTCCACCCCGAGCCGCGCAAGTCCGACTGCGCACAGGACAAGAGCGTGTTCGGAGAGACCGAGGAGCAGAAGTGCTCCACGCCCGTCTACCCGTGGATGCAGCGCATGAATTCGTGCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000690-0-2,0-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.252
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCTCCTTTATCCCTCCCTC
R:
GCTCCGCCGGGTTTATGATTT
Band lengths:
120-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types