HsaINT1017150 @ hg38
Intron Retention
Gene
ENSG00000173826 | KCNH6
Description
potassium voltage-gated channel subfamily H member 6 [Source:HGNC Symbol;Acc:HGNC:18862]
Coordinates
chr17:63535669-63538264:+
Coord C1 exon
chr17:63535669-63536068
Coord A exon
chr17:63536069-63538064
Coord C2 exon
chr17:63538065-63538264
Length
1996 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
ACTCTCCGCCCCGCCCCCAGCCC
3' ss Score
8.01
Exon sequences
Seq C1 exon
ACCACAACCCTGATTGGGCTATTGAAGACAGCGCGGCTGCTGCGGCTGGTGCGCGTAGCACGGAAGCTGGACCGCTACTCTGAGTATGGGGCGGCTGTGCTCTTCTTGCTCATGTGCACCTTCGCGCTCATAGCGCACTGGCTGGCCTGCATCTGGTACGCCATCGGCAATGTGGAGCGGCCCTACCTAGAACACAAGATCGGCTGGCTGGACAGCCTGGGTGTGCAGCTTGGCAAGCGCTACAACGGCAGCGACCCAGCCTCGGGCCCCTCGGTGCAGGACAAGTATGTCACAGCCCTCTACTTCACCTTCAGCAGCCTCACCAGCGTGGGCTTCGGCAATGTCTCGCCCAACACCAACTCCGAGAAGGTCTTCTCCATCTGCGTCATGCTCATCGGCT
Seq A exon
GTGAGTGAGACCTCATGCCACGGCCTAACTTCATGCTCTGGTCTTACCCGTGAAATTTTATGTGTAGTTTTGTACTGAGATAGAACATAACACATAGCAACAATTCATGCAGTACACTGATCCTAAGTGTGCAGCACAATGAATTTTTGCTGGTGTGTGCACCAAGTGTATACAATATTTAACACCCACACAGCCCATGCTATCTGCCAGGCACCAAGACAGGCTACATAATTTGCAGAGCCCAGAGCAAAATGAAATTGTAGGGACCCTTGTTTAAAAATTATTAAGAATCGGCCAGATGCTGTGGCTCAAGGCTGTAATCCCAGCACTCCAGGACACCAAGGTGGGTGGGTCACCCGAGGTCAAGAGTTCAAGACTAGCCTGGCCAATATGGTGAAACCCCATTTTTACTAAAAAATACAAAAATTAGCCAGGTGTGGTGGCACATGCCTATAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCAGTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCCAAGATCGTGCCACTGCACTTCAGCTTAGGTGACAGAGTGAGACTCCGTCTCAAAAAAGAAAAAAAAATTATTAAGAATTTTTCGCCAGGCATGGTGGCTCACTCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCATGAGGTCAGGAGTTCAAGACCAGCCTGACCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGGCGTGGTGGTACACACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGTGGAGCTTGCATGAGCCGAGATCACACCACTGCACTCCAGCCTGGGAGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAGAATTTTTCGACAGTGACAGCAGAGTATTAAACCAAATGCAGGGCTCTTAGCATGCGGCTCCGTGTGTCCACATGGGTTGTACACATGAAGCCAGCTCTGCCAGGCACTCTTTTAAACACTTTACAAAAGCCCACATTTCATTCCCTTCTGAGCCTGGTTTACAAAGCAAGAACCCAGGTAGTGCTAAAGTGCCAGAGGGCACACAGCTAGGAAATGTCCGAGTGACTCAATCCCAGCCCAGGGGTTCAGCTCCAAGGCTGTGCTGTTCTCAATCCCTGCTCCCAGCTGCCTGCCTCCCAAGACACCTGGTTTAGGAAAACAAGAGTCAGCGTGGAATTTTACACATAGATTGAGTTGTGATGTTCAGAGTATTTAGAGATATGAAAGTCCAGAAAAACAAAAACAAGGGAAGAAAATGGGTGAAAACAAGAAATTGAGAGTTTGCTCTTTTTTGTTGTTGTGGGTTTTTTTGTTTTGAGACAGTCTCATTCTGTCGCCCAGGCTGGAGCTCAGTGGCATGGTCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCATGCCTCAGCCTCCCGAGTAGCTGGGATTACAGACGGGCATCACCATGCCCGGCTAATTTTTCTATTTTTTTGGTACAGACGGGGTTTCACCATGTTGTCTGGGTTGGTCTCGAACTCCTGACCTCAGGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCCTGAGCCACCACACCCGGCGGAGAGTTTTATCTTTATTGTATTTTTACAACTTAAAGGAGAAAACAGATCTGAACTTTAAAAATCCATTGCCTTCCTTCTTTCTTCTCGGGAGTTTGACCGCTAGGCCCAGTAAGATGCCAAGAGGCACAGGACAGAGGGAGGAGGGCAGAAAGCCCAGGGGCCTTTGTCCCGCATGTGCCCTGGCGCTGTCCTGGTCACTCCTGACTTCTCCCTGGACAGAGGGGTCCTTCACCAGGGGGCTGCTGGAAGGAGGAAGACCTGGGTAAGCCCTTGGTGGTGTGGCCCAGTGGGGCCGCGGAGGAGCTCACTCTCCGCCCCGCCCCCAG
Seq C2 exon
CCCTGATGTACGCCAGCATCTTCGGGAACGTGTCCGCGATCATCCAGCGCCTGTACTCGGGCACCGCGCGCTACCACACGCAGATGCTGCGTGTCAAGGAGTTCATCCGCTTCCACCAGATCCCCAACCCACTGCGCCAGCGCCTGGAGGAGTATTTCCAGCACGCCTGGTCCTACACCAATGGCATTGACATGAACGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173826:ENST00000314672:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(66.5=97.8)
A:
NA
C2:
PF0052026=Ion_trans=PD(4.8=14.9)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGCTACTCTGAGTATGGGG
R:
CGAAGATGCTGGCGTACATCA
Band lengths:
354-2350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains