HsaINT1017998 @ hg38
Intron Retention
Gene
ENSG00000172037 | LAMB2
Description
laminin subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:6487]
Coordinates
chr3:49132792-49133118:-
Coord C1 exon
chr3:49132955-49133118
Coord A exon
chr3:49132869-49132954
Coord C2 exon
chr3:49132792-49132868
Length
86 bp
Sequences
Splice sites
5' ss Seq
CAGGCAGAG
5' ss Score
-0.65
3' ss Seq
ATCCCTGTTCCCCTCTTCAGGAT
3' ss Score
11.6
Exon sequences
Seq C1 exon
CCGCCCGGTGTTGCGCTCCTTCCCAGAATCCGCTCCGGCCTTTCCTTCCTGCCGCGATTCCCAACTTTGCTCAAAGTCGCTGGACTCTAAGCTGTCGGAGGGACCGCTGGACAGACCTGGGAACTGACAGAGGGCCTGGAGGGAAACAGGCCAAAGACCCACAG
Seq A exon
GCAGAGTTGACACGGAACCCCAAAGCAAGGAGGAGGGCTCGGGCCCGAGACCGTTCACCTCCCCTTATCCCTGTTCCCCTCTTCAG
Seq C2 exon
GATGGAGCTGACCTCAAGGGAAAGAGGGAGGGGACAGCCTCTGCCCTGGGAACTTCGACTGGGCCTACTGCTAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172037:ENST00000418109:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.346
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCGCTCCTTCCCAGAATC
R:
TTTCCCTTGAGGTCAGCTCCA
Band lengths:
178-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains