RnoINT0084104 @ rn6
Intron Retention
Gene
ENSRNOG00000047768 | Lamb2
Description
laminin subunit beta 2 [Source:RGD Symbol;Acc:2988]
Coordinates
chr8:117268337-117268615:+
Coord C1 exon
chr8:117268337-117268446
Coord A exon
chr8:117268447-117268529
Coord C2 exon
chr8:117268530-117268615
Length
83 bp
Sequences
Splice sites
5' ss Seq
AGGGTCAGC
5' ss Score
3.64
3' ss Seq
TCTATTTTACTTCTCTTCAGGAT
3' ss Score
9.84
Exon sequences
Seq C1 exon
TTACTCAAAGTCGTCAGAGTCTCTCAGATTGTGGAGGAGTGACTGCTGGTCGGACCCTGGGACAGACTGAGGGCCTGGAGGGAAACCAGCCCAGTACCCACACGGTCAGG
Seq A exon
GTCAGCATCAACCCCAAGGGAGATGGTGGGCTTTCGTCTTTGGACTCTTTATCTCTCCTAATTTCTATTTTACTTCTCTTCAG
Seq C2 exon
GATGGAGTGGGCCTCAGGAAAACCAGGGAGGGGCAGGCAGGGACAGCCTGTGCCATGGGAACTTCGCTTGGGCCTACTTCTAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047768:ENSRNOT00000072098:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.483
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATTGTGGAGGAGTGACTGC
R:
AGAAGTAGGCCCAAGCGAAGT
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]