HsaINT1022442 @ hg38
Intron Retention
Gene
ENSG00000177943 | MAMDC4
Description
MAM domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24083]
Coordinates
chr9:136850943-136851939:+
Coord C1 exon
chr9:136850943-136851105
Coord A exon
chr9:136851106-136851856
Coord C2 exon
chr9:136851857-136851939
Length
751 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CGAAGTTTCTGGGCTCCTAGGGA
3' ss Score
3.34
Exon sequences
Seq C1 exon
GCGGCAGCCTCTGGTGACGTGCTGTCCACCAGGCCTTGGAGACAGGCTAGCCTGGCCACAGAATTAAACGTGTTGCCACACCTGCCGGCTTCTGAACTCTGTCCTTGGCTTCCTGCACCCTGCGTCACCACCTCCGGGGGCCCCCAGACCCTAACTAAAGCAG
Seq A exon
GTGGGTGGGGGAACACAGGAGTGGCCCCAGGGAGTGGCGGTGCACACTCAGCCCTTTGGGGTCTGATAAAGGGGCCCGCTGATGGCCTGACTGCTCTTCCCACGGCCATCGTCCTCCAGGGCATCTTGGAGGAGGTCTGGCAAGCCCTTGCGAGAGGAGTCAGGGCCTGGTCCCTCGGGCTGGCCAAGACCTGGGGCGCCCACCAGTGCTCCCTCCTATGAGCCCATCCCAGGGCTCCCCAGTGTCCTGTCTGCCCTGAGGCTCCTTCCGTGACCTGCAGGCTCCTTCCATGACCAGCCCCATGGGGCCTACCAGTATCCAGGGTCAGGTCGCACAGCTGCATCTACCCCACAGGCTCACGTTGACTCTGGAGGCCCCTCCCAGGTCCCTCTTGCACCCGGCAGGGCTGTGGGCAGGACACGGGTTCAGGCCTTGCCCTGGGAAGCCCCATACACAGTGGGACTCCATGGGGTGGTGCAGGGGCACCCTGGGGGCCAGGGCTGGTTGTACACAGGGCACCCCCACCTTTGTCAGCTCACTGGTCCTCCGGCCAGCCTCTCCAGACGGGCACTGTCATAACCACATTTTACAGACCGGGACACTGAGGCTCAGTGACACAAGCTCCGAGGTCACACCATGGGAAATCACAAACAGGGCCTGGCCCCAAATGCCACACTCCTTCCCCAGCCCCAAAGACCCTGCCCCAAGCATGAGTCTGCTCCATGAGAAACCGAAGTTTCTGGGCTCCTAG
Seq C2 exon
GGACCCTGTATCTGGCACCGGACAGCACCTGGCTGCTCAGGACGAATGAATGACGGCGTGATCCTCCACAGCCTGACTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177943:ENST00000485732:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTCTGGTGACGTGCT
R:
AAGTCAGGCTGTGGAGGATCA
Band lengths:
238-989
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains