HsaINT1023293 @ hg38
Intron Retention
Gene
ENSG00000196199 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:HGNC Symbol;Acc:HGNC:29810]
Coordinates
chr13:19646443-19648521:+
Coord C1 exon
chr13:19646443-19647291
Coord A exon
chr13:19647292-19648421
Coord C2 exon
chr13:19648422-19648521
Length
1130 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
GGATATCATGTCATTTTCAGGAC
3' ss Score
7.45
Exon sequences
Seq C1 exon
AGACTATCCTTAAATAACGACATATTTGAGGCGAACTCTGATAGCGATCAGCAAAGTGAGACAAAAGAAGATACTTCCCCAAAGAAGAAAAAGAAAAAATTGAGGCAGAGAGAAGAGAAAAGCCCAGATGATCTGAAAAAGAAAAAAGCAAAGGCCGGGAAGCTAAAAGACAAGTCCAAACCAGACCTGGAGAGCTCCTTGGAAAGTTTAGTTTTTGATTTAAGGACAAAGAAAAGAATTTCTGAAGCCAAAGAAGAACTAAAGGAGTCCAAAAAGCCCAAAAAAGATGAAGTAAAAGAAACAAAAGAATTAAAGAAAGTTAAAAAGGGTGAAATAAGAGATTTAAAGACGAAAACAAGAGAAGATCCCAAAGAAAATAGAAAAACAAAAAAAGAAAAATTTGTCGAATCCCAGGTGGAATCTGAATCAAGTGTACTTAATGATTCTCCCTTTCCAGAGGATGACAGTGAAGGGCTACATTCCGACAGCAGAGAAGAGAAACAAAACACTAAAAGTGCAAGAGAGAGAGCAGGGCAGGACATGGGGCTGGAGCATGGCTTTGAGAAGCCCCTAGACAGTGCCATGAGTGCTGAGGAGGATACCGATGTCAGAGGCAGGAGGAAAAAGAAGACCCCGAGAAAGGCTGAGGACACTAGAGAGAACAGGAAGCTAGAGAACAAGAACGCTTTCTTAGAGAAGAAAACTGTGCCTAAAAAGCAGAGGAATCAAGACAGAAGCAAAAGTGCTGCAGAGTTAGAGAAGCTGATGCCTGTATCTGCCCAAACGCCAAAGGGCCGGAGGTTGAGCGGGGAAGAGAGAGGCCTCTGGTCCACGGACTCAGCCGAGGAG
Seq A exon
GTAAGGGCCACGGGAGGCAGCAGAAAACCCATGTTGAGTGGTCAAGACATTTCACAAGCAAGGAAAGGGAAACAGTCAAGCTATAAGAAAGTGTTTATGACCATGGGCGGTCATAAATGAAGATCCTCCAGCTTTTGGACACCGCAGCTTATCTCTTAGTCTCTGGTTTGTTTCTCTTAGAATGATTATGACTAGAAAATTAAAGGCTAATTTGTGAACAAAAATCAGGATGGTTTTTAGAGGTACTCAGATGATATATGGAGCATTGTATACTCAGGTTTATAGCTTCATCAGCTTATTTTATTAACTTTTCACATCCTGCTTGGTCATTTCCCCTGTTGTCTTGAGTATACCACTATTAAATAATAGGACACAAACTACATTAACCAGTATTTTAATGCTTTTTAAAATGTATTTAATAGGGAATTTGTCCCATTATAAAAATTATTTTTATATGGCTTTGCAAAATGGATATATTTTCCAAATTATGAGAGTATTTATATATGCAATATTTATCAAGGGCTATAAAAAACATCATTTTTTTCATCCATTATTTCCAGTTTTGGGAATGTATTTTAAGGAAATCATTTTAAAGAAGGAAAAGCTGTGCATACATAGTTATTTATGGCAGTATTATCTTCATTAGTGCTACAGCAAAATAGAACAACTTAGAAAATGCAGTGGAGAAGAAAACCCTACATAAATGTGAACACAGTCATGTAAAAATATGTGTGTAATGTAAACAAAAATGAATTTTAAAAAAGATTATCCATGTAAAAGTACGAGGACCAGAAGGGGGAACATGGAGAAGTACAATAGTCATGGTTGGTTAAGACTATGGGTGGAAAACTTTCTTATAATTTTCTTTTTTTTTTTTTAATAATAAAATTCCTAAAAGAGGGTTGGAAAACTGATGTTGGGTTTGGAATTTGATATTTTGTGAATTATTATATGGTTGACTGAGGAAGCAAAATTCTTTTGTGTGAAGAGGATTTAATGATCAGTTATCATGTACCACAGTATACAAGGGTGATTCCCTGAAGCCACAAACCTGTATTTTCCGGTTCTCAAATAAATTTACAGTGTCAACTCTTTATCCATTCTTGTTTTGGATATCATGTCATTTTCAG
Seq C2 exon
GACAAAGAAACCAAAAGAAATGAATCCAAAGAAAAATATCAGAAAAGGCATGATTCTGACAAGGAAGAAAAAGGCAGAAAAGAGCCAAAAGGATTAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196199:ENST00000361479:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.936 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTGCTGAGGAGGATACCG
R:
GGCTCTTTTCTGCCTTTTTCTTCC
Band lengths:
352-1482
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains