Special

HsaINT1023293 @ hg38

Intron Retention

Gene
ENSG00000196199 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:HGNC Symbol;Acc:HGNC:29810]
Coordinates
chr13:19646443-19648521:+
Coord C1 exon
chr13:19646443-19647291
Coord A exon
chr13:19647292-19648421
Coord C2 exon
chr13:19648422-19648521
Length
1130 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
GGATATCATGTCATTTTCAGGAC
3' ss Score
7.45
Exon sequences
Seq C1 exon
AGACTATCCTTAAATAACGACATATTTGAGGCGAACTCTGATAGCGATCAGCAAAGTGAGACAAAAGAAGATACTTCCCCAAAGAAGAAAAAGAAAAAATTGAGGCAGAGAGAAGAGAAAAGCCCAGATGATCTGAAAAAGAAAAAAGCAAAGGCCGGGAAGCTAAAAGACAAGTCCAAACCAGACCTGGAGAGCTCCTTGGAAAGTTTAGTTTTTGATTTAAGGACAAAGAAAAGAATTTCTGAAGCCAAAGAAGAACTAAAGGAGTCCAAAAAGCCCAAAAAAGATGAAGTAAAAGAAACAAAAGAATTAAAGAAAGTTAAAAAGGGTGAAATAAGAGATTTAAAGACGAAAACAAGAGAAGATCCCAAAGAAAATAGAAAAACAAAAAAAGAAAAATTTGTCGAATCCCAGGTGGAATCTGAATCAAGTGTACTTAATGATTCTCCCTTTCCAGAGGATGACAGTGAAGGGCTACATTCCGACAGCAGAGAAGAGAAACAAAACACTAAAAGTGCAAGAGAGAGAGCAGGGCAGGACATGGGGCTGGAGCATGGCTTTGAGAAGCCCCTAGACAGTGCCATGAGTGCTGAGGAGGATACCGATGTCAGAGGCAGGAGGAAAAAGAAGACCCCGAGAAAGGCTGAGGACACTAGAGAGAACAGGAAGCTAGAGAACAAGAACGCTTTCTTAGAGAAGAAAACTGTGCCTAAAAAGCAGAGGAATCAAGACAGAAGCAAAAGTGCTGCAGAGTTAGAGAAGCTGATGCCTGTATCTGCCCAAACGCCAAAGGGCCGGAGGTTGAGCGGGGAAGAGAGAGGCCTCTGGTCCACGGACTCAGCCGAGGAG
Seq A exon
GTAAGGGCCACGGGAGGCAGCAGAAAACCCATGTTGAGTGGTCAAGACATTTCACAAGCAAGGAAAGGGAAACAGTCAAGCTATAAGAAAGTGTTTATGACCATGGGCGGTCATAAATGAAGATCCTCCAGCTTTTGGACACCGCAGCTTATCTCTTAGTCTCTGGTTTGTTTCTCTTAGAATGATTATGACTAGAAAATTAAAGGCTAATTTGTGAACAAAAATCAGGATGGTTTTTAGAGGTACTCAGATGATATATGGAGCATTGTATACTCAGGTTTATAGCTTCATCAGCTTATTTTATTAACTTTTCACATCCTGCTTGGTCATTTCCCCTGTTGTCTTGAGTATACCACTATTAAATAATAGGACACAAACTACATTAACCAGTATTTTAATGCTTTTTAAAATGTATTTAATAGGGAATTTGTCCCATTATAAAAATTATTTTTATATGGCTTTGCAAAATGGATATATTTTCCAAATTATGAGAGTATTTATATATGCAATATTTATCAAGGGCTATAAAAAACATCATTTTTTTCATCCATTATTTCCAGTTTTGGGAATGTATTTTAAGGAAATCATTTTAAAGAAGGAAAAGCTGTGCATACATAGTTATTTATGGCAGTATTATCTTCATTAGTGCTACAGCAAAATAGAACAACTTAGAAAATGCAGTGGAGAAGAAAACCCTACATAAATGTGAACACAGTCATGTAAAAATATGTGTGTAATGTAAACAAAAATGAATTTTAAAAAAGATTATCCATGTAAAAGTACGAGGACCAGAAGGGGGAACATGGAGAAGTACAATAGTCATGGTTGGTTAAGACTATGGGTGGAAAACTTTCTTATAATTTTCTTTTTTTTTTTTTAATAATAAAATTCCTAAAAGAGGGTTGGAAAACTGATGTTGGGTTTGGAATTTGATATTTTGTGAATTATTATATGGTTGACTGAGGAAGCAAAATTCTTTTGTGTGAAGAGGATTTAATGATCAGTTATCATGTACCACAGTATACAAGGGTGATTCCCTGAAGCCACAAACCTGTATTTTCCGGTTCTCAAATAAATTTACAGTGTCAACTCTTTATCCATTCTTGTTTTGGATATCATGTCATTTTCAG
Seq C2 exon
GACAAAGAAACCAAAAGAAATGAATCCAAAGAAAAATATCAGAAAAGGCATGATTCTGACAAGGAAGAAAAAGGCAGAAAAGAGCCAAAAGGATTAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196199:ENST00000361479:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.936 A=NA C2=1.000
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTGCTGAGGAGGATACCG
R:
GGCTCTTTTCTGCCTTTTTCTTCC
Band lengths:
352-1482
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains