MmuINT1023236 @ mm10
Intron Retention
Gene
ENSMUSG00000079184 | Mphosph8
Description
M-phase phosphoprotein 8 [Source:MGI Symbol;Acc:MGI:1922589]
Coordinates
chr14:56673891-56676618:+
Coord C1 exon
chr14:56673891-56674739
Coord A exon
chr14:56674740-56676521
Coord C2 exon
chr14:56676522-56676618
Length
1782 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
TTGCATTCATTATTCTTTAGGAG
3' ss Score
7.54
Exon sequences
Seq C1 exon
AGACTATCTTTAAACAATGACATATTTGAGGCAGACAGTGATAGCGACCAGCAAAGTGACACAAAAGAAGATATTTCACCAAGGAAGAAAAAGAAAAAAATAAAGTGCAAAGAAGAGACAAGTCCAGAAGATCTGAGGAAAAAAAGGACAAAAATGGGAAAACTAAAAGACAAGTTCAAGACAGAGCTGGAGAGCACCTCTGAAATAATCGGTTTCGATGTAAAGACGAAGAAAAGAATTTGGGAAGTCAAGGAAGAATTAAAGGACTCCAAAAAGCCCAAAAAGGATGAAATAAAGGAAACCAAGGAATTAAAGAAAGCTAATAAAAGGGCTGAAGTAAGAGATTTAAAGATTAAAATAAGAGAAGATGTCAAAGAGAACCGAAAAACAAAAAAAGAGAGATATATAGAATCTCCGCTGGAGTCTGAATCGCCTAATGATTCCCTCATTCTAGAGGATGACAGTGAAGACTTTATTTCTGACAACAGAGAAGAGAATCAGAATGTGAGAAGTGTAAGAGATAAGACAGCACAGGAGACAGTGCAAGAGGGTATTTTTGAGAAACATCTGGATGACCTTATAAGTATTGAAGAGGATGCTGGTACCCGAGTTAGAAGGAAGAAGACGAAGCCAAGAAAGTTTGAGGAACCAAAAGAGATCAAGAAGCTTGAAAGCACGAATGCCTTTTTAGAAAGGAGAGCAATACCCAAAAAGCAAAGAAACCAAGACAAGGGCATAAGTAACCTAGAGTTAAATAAGCTACCATCACCTGTGTTTGCCCAAACCCTGAAAAGTTCCAGACTGAGTGGGGAAGAGAAGAGCCTAAAGTCCCCTGACTTGGCAGAAGAG
Seq A exon
GTAAAGTTGGTGGAGAACTTGAAGAGTACAGATATGGTTGGTACAGATTATTACTTGCTGTTGTATGGTTAGGAACTTTCACAAGGAATGACAAAGGAAACAGTCAAACTAGAATAAAGTGTAACTCAGGTAGTTATTAAATATGGTGGCACTGAAGTTGCCTGTGTGTGCTCAACTATTAAGCACCGGAACCCCAAGTTTACCTTTCAGTTTGTGCCTTGTTTTTTTTTTTTTTAATATTTTTTATTACGTATTTTCCTCAATTACATTTGTGCCTTGTTTTTTGTTTGTTTGTTTTACCAAACAAGACAAACCCCTGAGAGTTAATTTGCTACCAAAGTCAGAATTTTTGTAGATTTGTGCAGCATTTTATAGTCAGGCCTATCAGCTTCATCATCTTACTAATTTCATTTGGGGTATGTATGTTCTCTATTTTAAAAATACTGAAGTTTGATACAGTGCACTTTGATCTTATTCCCCTCTACTCTTTCCCTGACTTCCTCCAGATCCACTTTTACCTCTCCTTTCACCCAGCTTGTGGGGTTTGGTTTGGTTTGGTTTGGTTTTAGCTTTATCATGTCTAGTTTGTATTGTCCATATACTGAATGTGGGGCCATCTTCAGGTACATGGTAGATTTACTAGTAGCCACACACACCCTTAAAGAAAACCTAGAAACTACCCAATAGTCAGCTCCATAGCTCTCCTCATTTAGGAGTGGAACTTAGTGGCTCCTTTCCTGTTTCATGTTAAAATGTTGACGAGCTTGATCTTGTGTCTATCATACTTCCTCCCTGCCCCTCTCTAACAAAATGTCTTACACTATAGCCCAGGCTAGCCTTGAGCTGGTCCTCTGGCTCCTCCTTCCTGGGTGGGAGTTGAAGTTACGTTTGGCTTTCACTTTATTTGGGGGAGGGCGGTGATACGATTTATTTGTATGGCTTGGCAGTAGTAGTACCTGGTGGTAGTACCCACCTTTAATCCAGTGCTCAGGAGGCAGAGGCAGGTGGATCTCTGAGTTCAAAGCTAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTTCACTAGAGAAACCTGTCTTAAAAAACAAACAAATGCACAAAAACAATAAAAGATTTCTAGATTTATTGGTATGAATGTTTTATTTGCATATAGGTACACGTATCACGTGTGCCTGGTGCCCAGAGAGTCCAGAAAAAGGCATCATATAGTCATTGAGTGCTGGGAACTGAACCCAGGTTCTTTATGAGAGCACCAAGTACTCTTAACATCTGTGCCATCACATCACTGCAGCCCCAAGATTGTTTTTATAGAGTTTAATTTTGTAGCAATTTAGTTTTTATTATACAAAAGAAGGGCTTTCACGGTGACATTTTCATACCTGTATATAATGAATTGCAAGGTTTTTTTTGTTGTTGTTGTTGTTTTATTTGAAATAAGGTCTCACTCCATGACTGAGCTGGCCTTGAATTTATGTAGATCTGTCCCTGCCATCCTAGTGCTAAGATTAAAGGTTTACACTATCATGTAAATGTATATTCAAACATTTTAAGTAATAGATTCTTAAAAGAAAATGGAGAAACAAAGTATTGGGTTTTGGGTTTCATTTCATATGGCTTAGCGTGTCTGCAGAATAGTCTTGGTGGCGGGAGGGAGCAGTGGGAGAAACATTAAATAATCAGCTGTGTGCTCAGGCGTGTGTAGAATATTTGGTTTGCAAATATTACAGTATCAACTCTTTATCTTTTATTTTTTGTTTTGCATTCATTATTCTTTAG
Seq C2 exon
GAGAAAGAGAAAAAAAATGAACCCAAAGGAAAATACCAGAAAAGGTATGATTTGGACAAAGAAGAAAAAGCCAGAAAAGAGCCAAAGGTATTAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079184:ENSMUST00000116468:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.698 A=NA C2=0.737
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGGATGCTGGTACCCGA
R:
ACCTTTGGCTCTTTTCTGGCT
Band lengths:
350-2132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types