GgaINT0112888 @ galGal3
Intron Retention
Gene
ENSGALG00000017145 | MPHOSPH8
Description
NA
Coordinates
chr1:183537874-183538773:-
Coord C1 exon
chr1:183538759-183538773
Coord A exon
chr1:183537976-183538758
Coord C2 exon
chr1:183537874-183537975
Length
783 bp
Sequences
Splice sites
5' ss Seq
AAAATAAGC
5' ss Score
-0.87
3' ss Seq
ATTTGATCCTTTTTCTTAATAAC
3' ss Score
-4.15
Exon sequences
Seq C1 exon
ATTTACCTTCTAAAA
Seq A exon
ATAAGCGTGTAGGGTACACTGTGCATCTCATCAACATCAGGAAATCTGGAACAGAACTCAAGTTTTTTAACAGCCCTTGTGCTTAGCAGTATCTGGTAATGTTGTCAGTTGTTTGCTCCTACTGTGGGCACCTGCCTGGGATGATGTCTGTTTGTGCTGCTGGTTCATGGTGTCTGTCACCAAAAGGCAAAGTTTTGAAGAGGAAAGAAGGAAGGCTTCACGATGTACTAAATTCATTTAGTTTTTTTACCTTTCTAAGAAATGGCAGCATTAATGATTCTGTGATCACTTCAGGACTTGGATGTTTATTTGTGCCTCTTTGAGTTGTAGTCTCCTTATTTGGTACCTTGGGATTTCAGCTGTCGTACCTCAGTAGAGAGAACACTTCTAAGAGAGGGTTCCGGTTTCTGCTTGCTTTGGAGTCACAAATGACGCCCCAGCTGACATTTCAGACTCAGAATGTTAAATAAGAGTGGCTTCCTGGTGTGTTTTGTCTTTGCTGTGTGTCATTTTAGGAAACGGTAACGCAGCCTAATTTTAAATGTATGCTGGTTTTGATATGTGTGAGTGCCTCACACGGCTGGGATGCTGCAGAACTCCAAACTGAAGTTCTTTAATTTGGAAGATCTTTTCTTCTTAGTGAAGAAGCCTTCCCAGAACAGCTCCTGTCTCACCCATTTAGTTCTTTTCTTAAGAGTGTTTGTAAGTCTGTTGTCCATAAGATTTCAGTAGTGTTATTTTCCACTTTCTCAGTTCCACTCTCATTTGATCCTTTTTCTTAAT
Seq C2 exon
AACAGGAGAAAGAAATAAAGAAATCTGAAATGAAAGAAAAATCTGTAAAAAAAGAGTCTGAAAAAGAAGAAAAGATCAGAAAAGAACAGAAGGTCGTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017145:ENSGALT00000027690:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.686
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]