HsaINT0104635 @ hg19
Intron Retention
Gene
ENSG00000196199 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:HGNC Symbol;Acc:29810]
Coordinates
chr13:20220583-20222661:+
Coord C1 exon
chr13:20220583-20221431
Coord A exon
chr13:20221432-20222561
Coord C2 exon
chr13:20222562-20222661
Length
1130 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
GGATATCATGTCATTTTCAGGAC
3' ss Score
7.45
Exon sequences
Seq C1 exon
AGACTATCCTTAAATAACGACATATTTGAGGCGAACTCTGATAGCGATCAGCAAAGTGAGACAAAAGAAGATACTTCCCCAAAGAAGAAAAAGAAAAAATTGAGGCAGAGAGAAGAGAAAAGCCCAGATGATCTGAAAAAGAAAAAAGCAAAGGCCGGGAAGCTAAAAGACAAGTCCAAACCAGACCTGGAGAGCTCCTTGGAAAGTTTAGTTTTTGATTTAAGGACAAAGAAAAGAATTTCTGAAGCCAAAGAAGAACTAAAGGAGTCCAAAAAGCCCAAAAAAGATGAAGTAAAAGAAACAAAAGAATTAAAGAAAGTTAAAAAGGGTGAAATAAGAGATTTAAAGACGAAAACAAGAGAAGATCCCAAAGAAAATAGAAAAACAAAAAAAGAAAAATTTGTCGAATCCCAGGTGGAATCTGAATCAAGTGTACTTAATGATTCTCCCTTTCCAGAGGATGACAGTGAAGGGCTACATTCCGACAGCAGAGAAGAGAAACAAAACACTAAAAGTGCAAGAGAGAGAGCAGGGCAGGACATGGGGCTGGAGCATGGCTTTGAGAAGCCCCTAGACAGTGCCATGAGTGCTGAGGAGGATACCGATGTCAGAGGCAGGAGGAAAAAGAAGACCCCGAGAAAGGCTGAGGACACTAGAGAGAACAGGAAGCTAGAGAACAAGAACGCTTTCTTAGAGAAGAAAACTGTGCCTAAAAAGCAGAGGAATCAAGACAGAAGCAAAAGTGCTGCAGAGTTAGAGAAGCTGATGCCTGTATCTGCCCAAACGCCAAAGGGCCGGAGGTTGAGCGGGGAAGAGAGAGGCCTCTGGTCCACGGACTCAGCCGAGGAG
Seq A exon
GTAAGGGCCACGGGAGGCAGCAGAAAACCCATGTTGAGTGGTCAAGACATTTCACAAGCAAGGAAAGGGAAACAGTCAAGCTATAAGAAAGTGTTTATGACCATGGGCGGTCATAAATGAAGATCCTCCAGCTTTTGGACACCGCAGCTTATCTCTTAGTCTCTGGTTTGTTTCTCTTAGAATGATTATGACTAGAAAATTAAAGGCTAATTTGTGAACAAAAATCAGGATGGTTTTTAGAGGTACTCAGATGATATATGGAGCATTGTATACTCAGGTTTATAGCTTCATCAGCTTATTTTATTAACTTTTCACATCCTGCTTGGTCATTTCCCCTGTTGTCTTGAGTATACCACTATTAAATAATAGGACACAAACTACATTAACCAGTATTTTAATGCTTTTTAAAATGTATTTAATAGGGAATTTGTCCCATTATAAAAATTATTTTTATATGGCTTTGCAAAATGGATATATTTTCCAAATTATGAGAGTATTTATATATGCAATATTTATCAAGGGCTATAAAAAACATCATTTTTTTCATCCATTATTTCCAGTTTTGGGAATGTATTTTAAGGAAATCATTTTAAAGAAGGAAAAGCTGTGCATACATAGTTATTTATGGCAGTATTATCTTCATTAGTGCTACAGCAAAATAGAACAACTTAGAAAATGCAGTGGAGAAGAAAACCCTACATAAATGTGAACACAGTCATGTAAAAATATGTGTGTAATGTAAACAAAAATGAATTTTAAAAAAGATTATCCATGTAAAAGTACGAGGACCAGAAGGGGGAACATGGAGAAGTACAATAGTCATGGTTGGTTAAGACTATGGGTGGAAAACTTTCTTATAATTTTCTTTTTTTTTTTTTAATAATAAAATTCCTAAAAGAGGGTTGGAAAACTGATGTTGGGTTTGGAATTTGATATTTTGTGAATTATTATATGGTTGACTGAGGAAGCAAAATTCTTTTGTGTGAAGAGGATTTAATGATCAGTTATCATGTACCACAGTATACAAGGGTGATTCCCTGAAGCCACAAACCTGTATTTTCCGGTTCTCAAATAAATTTACAGTGTCAACTCTTTATCCATTCTTGTTTTGGATATCATGTCATTTTCAG
Seq C2 exon
GACAAAGAAACCAAAAGAAATGAATCCAAAGAAAAATATCAGAAAAGGCATGATTCTGACAAGGAAGAAAAAGGCAGAAAAGAGCCAAAAGGATTAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196199-MPHOSPH8:NM_017520:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.933 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTGCTGAGGAGGATACCG
R:
GGCTCTTTTCTGCCTTTTTCTTCC
Band lengths:
352-1482
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)