MmuALTD0008691-2/5 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000079184 | Mphosph8
Description
M-phase phosphoprotein 8 [Source:MGI Symbol;Acc:MGI:1922589]
Coordinates
chr14:56673893-56676618:+
Coord C1 exon
chr14:56673893-56674739
Coord A exon
chr14:56674740-56674775
Coord C2 exon
chr14:56676522-56676618
Length
36 bp
Sequences
Splice sites
5' ss Seq
ATGGTTGGT
5' ss Score
5.29
3' ss Seq
TTGCATTCATTATTCTTTAGGAG
3' ss Score
7.54
Exon sequences
Seq C1 exon
AGATTAAAATAAGAGAAGATGTCAAAGAGAACCGAAAAACAAAAAAAGAGAGATATATAGAATCTCCGCTGGAGTCTGAATCGCCTAATGATTCCCTCATTCTAGAGGATGACAGTGAAGACTTTATTTCTGACAACAGAGAAGAGAATCAGAATGTGAGAAGTGTAAGAGATAAGACAGCACAGGAGACAGTGCAAGAGGGTATTTTTGAGAAACATCTGGATGACCTTATAAGTATTGAAGAGGATGCTGGTACCCGAGTTAGAAGGAAGAAGACGAAGCCAAGAAAGTTTGAGGAACCAAAAGAGATCAAGAAGCTTGAAAGCACGAATGCCTTTTTAGAAAGGAGAGCAATACCCAAAAAGCAAAGAAACCAAGACAAGGGCATAAGTAACCTAGAGTTAAATAAGCTACCATCACCTGTGTTTGCCCAAACCCTGAAAAGTTCCAGACTGAGTGGGGAAGAGAAGAGCCTAAAGTCCCCTGACTTGGCAGAAGAG
Seq A exon
GTAAAGTTGGTGGAGAACTTGAAGAGTACAGATATG
Seq C2 exon
GAGAAAGAGAAAAAAAATGAACCCAAAGGAAAATACCAGAAAAGGTATGATTTGGACAAAGAAGAAAAAGCCAGAAAAGAGCCAAAGGTATTAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079184-16-5,17-5,18-5,19-5,20-5-2/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.698 A=NA C2=0.737
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAGCCTAAAGTCCCCTGA
R:
ACCTTTGGCTCTTTTCTGGCT
Band lengths:
124-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types