HsaINT1023340 @ hg38
Intron Retention
Gene
ENSG00000153029 | MR1
Description
major histocompatibility complex, class I-related [Source:HGNC Symbol;Acc:HGNC:4975]
Coordinates
chr1:181049052-181050286:+
Coord C1 exon
chr1:181049052-181049312
Coord A exon
chr1:181049313-181050010
Coord C2 exon
chr1:181050011-181050286
Length
698 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
GGCTTCTGTGTGTGTTCCAGGGT
3' ss Score
10.08
Exon sequences
Seq C1 exon
GGACGCACTCTCTGAGATATTTTCGCCTGGGCGTTTCGGATCCCATCCATGGGGTCCCTGAATTTATTTCGGTTGGGTACGTGGACTCGCACCCTATCACCACATATGACAGTGTCACTCGGCAGAAGGAGCCACGGGCCCCATGGATGGCAGAGAACCTCGCGCCTGATCACTGGGAGAGGTACACTCAGCTGCTGAGGGGCTGGCAGCAGATGTTCAAGGTGGAACTGAAGCGCCTACAGAGGCACTACAATCACTCAG
Seq A exon
GTGTGCATGCGGCAGAGACAGACGCTTCCCCCATCCCACCCCAACCCGCAGAGACCCCTGGGCTGGCCTCCAATAAGCGGATGCTGAATTGCACCTGCTGTAGCTTTGGCAAAGCCTGAGGAATCAGGTTGGTGGAGTTCAGGGCCTCCCATCTGCCTGTGCATCTTCTGGACTGTCCCTCTCTCCCCCAGGAGCACTCTGTCATTTGCCCCACCCACTCTTCCCCATCTCTGTATCCGTATCTGCATCCCATTTCCACTCAGGCTTCTGATATGCATCTCCTTTTCCATTCTAAATTTGCCCATTCTGCGTCTCACTTCCTGGTAGTCAGGCCTAGTGACTTGCTTATGAGTATCGACAGTAACTTTCCCAGGGGTATTTCTGGCTCCTGCATCTCTCTCCCTCCTCCACTGCAGTCAGAATAGCCACAAAGTTTATCAGTCATTCCCATTACAGGATAACTCCCCAAGGCGGGAATTAGCACACTCCTTTGACAGGCAGTAGGTACTTCACAGATACCTGCTGACAGGTGGGCTTCCATAAGGGGGACCTCCTGGGGACTCAGCGATGCCATGGCAGGCCTGGGGGGTGACATAATGTAGACCAAAGGATGCTTCCAGCCATGCCCCTGCTCCCAGCACTTGAGAGCCCACCTCTGTCTCTGTGTGGACCCCTCTGGGCTTCTGTGTGTGTTCCAG
Seq C2 exon
GGTCTCACACTTACCAGAGAATGATTGGCTGTGAGCTGCTGGAGGATGGAAGCACCACAGGATTTCTGCAGTATGCATATGACGGGCAGGATTTCCTGATCTTCAATAAAGACACCCTCTCCTGGCTGGCTGTAGATAATGTGGCTCACACCATCAAGCAGGCATGGGAGGCCAATCAGCATGAGTTGCTGTATCAAAAGAATTGGCTGGAAGAAGAATGTATTGCCTGGCTAAAGAGATTCCTGGAGTATGGGAAAGACACCCTACAAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153029:ENST00000367580:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=NA C2=0.001
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(49.4=98.9)
A:
NA
C2:
PF0012913=MHC_I=PD(50.0=94.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCGCACCCTATCACCACAT
R:
ATGCCTGCTTGATGGTGTGAG
Band lengths:
342-1040
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains