HsaINT1023342 @ hg38
Intron Retention
Gene
ENSG00000153029 | MR1
Description
major histocompatibility complex, class I-related [Source:HGNC Symbol;Acc:HGNC:4975]
Coordinates
chr1:181053573-181061938:+
Coord C1 exon
chr1:181053573-181053677
Coord A exon
chr1:181053678-181055224
Coord C2 exon
chr1:181055225-181061938
Length
1547 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
AAAAACCCCTTTCCTTTCAGAGC
3' ss Score
8.9
Exon sequences
Seq C1 exon
AATCAGAAACTATCCCTCTTGTGATGAAAGCTGTCTCTGGGTCCATTGTCCTTGTCATTGTGCTGGCTGGAGTTGGTGTTCTAGTCTGGAGAAGAAGGCCCCGAG
Seq A exon
GTGAGAGGCACATGGAAGGGATCCAGGGGGCTGCAGACTCTCCTGCATCTCTCCAGTTTTATTTTCTGCACCTGCTGCTCCCTCCTCCATTCAGAAATGGCTTGGCTCTCAGGCTGGGATCACAGAAGGACCTGGGACAACCCTCCCACCATGTAGGGGACACAAAGCATGGATAAAGCTTACAGGGAGAGTGGTCTCTTTTCATAGGTGATGCCTGACATCAACAAACTAGTACATCTGTCCAGGGGAACTGTCCCCCTAGAAGTTGGGTCAGAGAAGATATGGGGATCTTGATTTGTCTTTTTCCAAACCATCTTTTTATTATTAATTACTATTGACTTCTGGGGCAGTGTCCTTTGTTTCAAGACTTCAGTCAGTTTTCCCATTTTGACCACCATTCTTTCATCCCAAGCATATGAAAGTCCTTTTCCTTGTAAATTCATTATTCAAAACATTAAATATGTAAGAGTAGATACCTTCAGGGAATGGGACTTAGAGTAAGGAAAAGGGGAGGAGAAGTAGGAGATATATAGGCTCTTGATAATGTGGAATAACATAAATTCATTCAGTAAGTATACATTAATGACCTACTGTGCTCCAGGCACTGTACTGGTTGCTGGGATATAACAATGAACAAGACAGATACGATCCCTGTTTTCATAGAGCTTACAATAGAGCCTGGTAAGGTTATCTCCTGGCTCTGGCTTCACTAATTGCTCAAATTGATCACAGGATAGTACCGATGAGACCATGCTTTGAACCCAAAGTGGACCAGAAGTTTGGTTTTCCTTCATAGACATAGACCTCAACTCCAATTCAGGTGATAACTGTACAAAAGCATGTTGTTAGATCAAAGTAAAACCAACCCTTTTACTAGAAAATCAGCTCAGAGGCCGGGCGTGGTGGCTTACAACTTGTAATCCCAGCACTTTGAGAGGCCGAGGCAGGCGGATCACTTGAGGTCAGGAGTTCGAGATCAGCCTGGCCAACATGGTGAAACCCTGCCTCTACTGAAAATATTAAAAAAAAAAAAATTAGCTGGGCGTGGTGGCACATGCCTGTAATCTCAGCTACTCAGGAGGCTGAGACAGGAGAATCGCTTGAACCTGGGAGGCGGAGGTTGCCGTGAGCAAAGATCGCTCCATTGCACTCCAGCCTGGGCAGCAAGAGCGAGACTCTGTCTCAAAAAAGAAAAAAGAAAAGAAAAGAAAAGAAAATCAGCTCAGAGAGTTAATGGGTTGTTAATGTTTTCTTTATAGATAAAGTACAGCACTAATCCTAATCCAATAAATGATAGTGAAACAAACAAAAAATTTTTTTACAATGACATCCCTCTCTCAATAATTATACAGACTGTGAGTTCCTGCTTTTTATCTTATAGAGTTTACAAATTTGAGCTAAAGTTTGTCAAGTACTAAGAGAATCTTGACAAAGCAAGCTAAAACTGTCGATGCCTGTTTCTCAGATTTTGCTGAACACTGCATACTTTATTTTTGAGCTGTGAGGAAACATTCTTGTAATCTGACTAAAAACCCCTTTCCTTTCAG
Seq C2 exon
AGCAAAATGGAGCCATCTACCTTCCAACACCAGATCGATGATTGCAGATCCCTCTTTTCCAGTTCTCCTTCCTCTAGGAGCCATGTTATCCTCTGTCCCCCATAGAGTCAAGCCTAGTGCTTGAAGGTCCTGACGACACCCACAACATACATGAGAGTAATGGGATTGAGCATTTATGGCAGCAACAGAGGAGCCACAAAATGTTCTTTGTTCTTTGGCTCCAAAAAGACTGTCAGCTTTCAGTCTCTTTTGATGGACTGTTTTATCAGAGTTGACTTTAAATACAGCTTGTCTCATGACACAACGCTTCCCTACATTCTATTTGTCAATGATGATTTGCAACTAGTTGGAGATTCTCAGAGCAGGAAGGAATCTTTTCAACCAGAGCAGGAACTGTCTTCTGCAATGCCTTGGACTTGAGCCTCCAGCCTCCACTTGAACACCATGTGAAGGGAACCTCAGTACTTCATAAAATGGCCTTTCTCATTCATCTTTCATGGGAACATTTATTGTACAAGCGCTTTGAATATCATGGGCACCATGACTGTGACCCTACAGGTAGGATTGGATCACTCCATGAGAGTAGCCGGCAGGTTTCTACAATGGCCTGGGAATGGACTGATTATTTTTATACATTTTCTGGCCTGAGAGAAAGCCAAAGTCCCCTGCTGTTCACAGCAACCCTGCCTGGGAGCTTGGAATCTTGGTAATCTGCCCGGTTGGATCTATGGAGGTAGTCTCACCCTTTTTGTCTTTTGTGGGAAATTAAGAGAAATAATTATCAGACATATCATCACCTCCAGTGGAACTACAGAGACCTGGACCCAGCTGCACTATTTTAATGTAAAAATAACAGTATGGCCAGGTGCAGTGGCTCACGCCTGTAATCCCATCACTTTGAGCAGCCAAGGCGGGCGGATCACGAGGTCAGGAGATTAAGACCATCCTGGCCAATATGGTGAAACCCTGTCTCTACTAAAATACAAAAAATTAGCTGGGCATGGTGTTGCGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGACAGGGGAATTGCTTGAACCCGGGAGGCAGAGATTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGCGACAGAGTGAGACTCTATCTCAAAATAATAATAATAATAATAATAATAATAATAATAATAATAACAGTATATTTGGTGTCAGGAGAGGGCTCAATTCTCATTTCTGCCTTTCCTGTGCTGGCTCATGGTAGCTGGGCATGACTTGCCTTCCTACATAGGTTGTCTTCATACATATGCACTGGGAATCAATAAAAGCCCATGGTGAGAATGAACATCCCCTTAATGTTCCTTACTATCCCCAACCCCTGAGGCCTCACCTACTGCCCTGCCATGTGGAGCTACTTGCCCTGGGGCTGCCAGTCACACATTCCTCGGTCCTACTTCTCTGACCCCGTTTGACTCTGCACCTGAGCCCTAATGCTTACTTCAGTGACCTGAACTTTGACAAGTGGCTTTTGTCCTGCACCTCAGGTTTGACCTCTGCTCTCCCTTGACCTTGACTGTGACATTTGACCTTTGGCTTTAATCATTACAGCCTCAGATAAAGGTACCTTCAGCCCGGGCACAGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCTGAGGCAGGCGGATTCCCTGAGCTCAGGAGTTCAAGACCAGCCTGGGCAACACGGTGAAACCCTGTCTCTACTAAAATACAAATAATTAGCTGGGCATGGTGGCATGTGCCTATAGTCCCAGCTACTTGGGAGGCTAAGGCAGGAGAATCACTTGAATCTATAAGGCAGAGGTGGCAGTGAGCCGAGATCACACCACTGCACTCCAGCCTGGGCAACGGAGCAAGACTCTGTCTCCAAAAAAAAAAAGAAAGATACCCTCAGTGTGCCAGGCCTCTAAGAGCTCACCTGCCAGGCTTCCTCCTTGCTCCACTGTCCCATGTAATTCCATATATGAAGCTACCACTGTACATCTCTCTTTTCCGGTGCCTGTTGAGTTGCATAGAAGCACAGTTGTGTTTATTTTGTTTTTAGGGTTGCCATGGGCAATTTCCGTGCCACTTTTAAGCAGTGTTGCACTGTGAAGAGAATGTAGGCAAGTTTATTTCTGGAATGGTTTCTTCTTACAATCAGAATAGTTAGGATGTAATATATTTTTGGGTGGGCATTTAAAGTGAAAAGGTACATATTTACATAGACACAGGTGATAATGTATCTATGTAAATGCCTTTTGATTCTGCAACTGCAGGATACTCTCATCAAAGACACAGATAAAAAGCCTCTGTGTTTCCAAGGCCTTGCCCTACACCTAACACATAATATGTCCAAATGGATGAAGAGGAGGCAAGGACAAGGATGTGATGACAAAACATTCTGTTATGCACTTGTAGCATTTATGTTTCTTCCTGGGGGATTTTATAATACTAAAAGAATCATAATATAAAGAGATGATTAAAAAAAAAATACTGCCGGGCACGGTGGCTCATGCCTGTAATCCCAGCATTTTGGGAGGCCGAGGTGGGCAGATCACCTGAGGTCGGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCTGTCTCTACCAAACATACAAAATTAGCCGGGGATGGTGGCGCATGCCTATAATCCCAGCTACTCGGGAGTCTGAGGCAGAAGAACCGCTTGAACCCGGGAGGCAGAGGTTGTGGTGAGCCGAGATCGCGCCATCGCACTCTAGCCTGGGCAACAAGAGTGAAACTCCATCTCAAAAAAATAAAAATAAAATAAGTAAGTAATACCTAAAATTCTGCAACCTTCATTTTACTATAGATGGTTGAAGATTATATTACTTCTTAATTGTTTTAGCCTTGTTATTGCTTCATTACTTCATGGTTGTTGAGTACAGATGCTCAGTAATCATAACCTATGAAATATTTGACACCATGATCTAAACATTAAAAACAAATAACTGTGCTATTGCCACAGCTATGTTTTGGCTTTGAATTTTCTTTACTGAATATTTTGGATCAAGAACACTAGATGAGAAACCTGTTCAACTCTGTTCTTTTTTTTTTTTTTAACTCCACTGTATTTATTACCTGTTTTTGTTTTTTTTGTTTGTTTGTTTTTGATGTGCATATAGACCAAGATGTGGTAAATTTAAATGGCAGATGTTTTTGATGTGGTACATTTAAGGGAGAGAAAGCAGTTTAAAGAGCAGGGTGAAAAATCCAACAAGACTCCATCGAGAGTTTCTGAGCTCTCCCATCAGGGGCCAGTCCTCCTTTCCTCTCTCCTCTTACTCCCATGATTTCCAAGTTGTGATCCTTTCCTTATTTCTGAGGAATGACTTGGTTTCTCCTCTTCTTTTTTTGGCCTGAGAGAAGATGTTTTTGCACTTGTAGCTATGAGGAACAGATTGTCCACTAGGGAGGCCAGCTGATCATTTTCTGCCAGAGTCACACAGAGCAGTCACACCTTATTTTGAAAACCACTGTCTGGGGTCTTTGTCCTCACATATGCAGGTCTAGTGTCCCCACAAAGTGATCAGATGGATATATAAAGTGGAGTGCCAATGTATTAATTTACTGTGAGAAACACAATTGCTAAGTGGGTCAGATATCTGTCTCAGCTGGTCAGTACACCTTCCAGCAGGAAAATCTACATAAGAACAACTAAATCACAATCTGTAGAGTGCTTGATGACCCCAGAATTGGTGCAAGGGGACACATTCTTGCTTGTTAGCACCTGCTCTCTGGAGTTTGCTATTTTCTCACACACAGTGTATTAGTTCACAGAATGTTCTCCAAGGAGGACAGGGGGCTTTGCCCATAGCCATGTGCTGTGGGCAGCAGAGCTAGGAAGAAGCACAGGCATCTCCCAGCCCAGGTGTTTCCCACTTAACTGCATTGCCCTTTTCATCTTTTTTTTTTCCCCAATAGCTTCAGGACATTCAGTACATTGTGCTTTTTAGAGGTTGATGATTCCACTGCCTGAGCTGCCTTCACCTCTCTTTCTTTGGAAATTGCCATCTTTGAGCATTGTATGTCTCTGTAACATCTCTGCATCTCCTTTTCACTCTGGCCTCCCTTTCTCCATTGTCCTTCTAGCTTCTGGTTGCCCCAAACCCCACAGACTGTGTAACAAAACCCAAAACCTATTGGTTTAAAACAATACCCATTTTATTTTCTTTCATAGTTTCTATGGGTCAGGAATTTGGATATGGCTTGGGTAAGCAGTTCTGGCTTCTCATGGAGTTGGAGGCAAGTGGTGGCTGGAACAGAAATGGGGCAGCCAGGGGTGGTGGCCAGGCATCAGCTACATCTCCTCCATGTAGTCTCAGGAACTCTCCATGTAATCTCTCTGTGTGGGTTGGGCTTCCTCACAACATGGTGGCCTCAGGGCAGTCACTGCTTACATGGCAGCTAGCTTCCCTCAGAGTGAGTATCCCAAGAGATCACAGTCAAAGTGCATAGCATTTATATAATCTAATCTTGGAAGTCACAAAATGTCATTCTTGTGATACTCTCATTGGTGAAGAAGTCATAAAATCCTGCTCAGGTTCAAAAAGAGGGTGTATAGAACCCAACACTCAATAGGAAGATTGTCAGAGTTACATTGTAAGAAGAGCATGTAGTTGGGAGATATCATTGTGGCCATTTTGGGAAAGATGCAACATGTCACAATGTCATGTTCTCCATCGTCTCCCCGTTCCACCTTGTACTGGTTTCCAAGGGTAGTCGTTTAAAAGTACCACAAAAACTGGGTGGCTTGGAACAACAGAAATTTATTGTTTCACAGTTCTGGAGGCCAGAAGTTCAAAATGAAGTGTTGGCAGAAACATGCTGCCTCTAAAGGGACTGGGAAAGGATCTGTTCCAGGCTTCCCTCCTATCTTCTGGTTGTTCCTTGCCTTCTGGCTGCGTAACTCTAGTCTTCATTTGGTGTTCTCCCTGCATGCATGGCTTTGTGTCCAAATTTCCTTTTTTCATGAGGCCATCAGTCATACTGGATTAGGGACCCACTCTACTACTGCAGGATGACCTCACCTTCCCAAATTACATCTGCAACAACCCTATTTCCAAAGAAGGCCACATTCTGAGGTACTGGGGGTTATAACTTCAACATGAATTTTTTGGAGGAAACAATTCAACTCCTAACACATCTCTACCCAACCTCTGTAGGTTCCCTCAATCCACCAAAATTTTTTGGCTCCACTGGATTATCTAGCAGTTAGGAAACCAAGATCATTAAATGAATTCACCGCAACTACAGTGAGACTGACTACCTTAGCTTACCTCTGTGAAAGGAGTTAAGCCAAAGGAATCTGTGGAATTTTGGAGAGTTTGGGAGCATTTGGGGGCAGGAGGCAAATGTTCTTCCTTTAAATCACAACACTTAGTTCTCTTCCATTTATAAGACTCACCCCTCCATCCCAACCCCTGCACCACAGGACAAGGAAGTGTTCTTGGTCTTCAACTTTCATCCCTGATGGTGAAAGCAGTTGCTCCTGACCTATTTGCCCACCAGCTTCTCCTCTGGAGCCTGAGGCTTCTGATGCCTGCCTGGCTGGTTCTCAGTAAGAAGGTCAAGTTCAACCAGAGGGGAGATGCTGATGCCTTTCAGTACTTAAATATGAGTTCAGACCCTGGGGCCTGGACATAAGATTTGGGGTCCCCTGGATATAAGATTTCTGAAAACACTCAGACTGTGGAGACCCCTGCTGAGGGAGAAGCCCCAAACTGTGGCTTCAGGGGAATGCACCAAGGCTCTCATTGAGGCCACCTTCTCCAACAAGCTCCCCTCCTGCTTCCCCATGGCTGGCATGGCTGAGGAAAAAGGACACTGAGCACAGCCCGTGCATGAGCGGCTTGCCATGCAACAGGATAAAACCCATAATGCCACTCAGCAAGCCTTGGTTGTAAATCTAGTTTGATTACATTTGTAATCAAATGATGGCCATTTGTTCTGTTTCTGGTTTGTGAACCAACTGAAGACATAAGCAGGGCCTCAGCTAACCCACAAATAGCACATGTGTGCAAACTGGAAAAATGAACCCTTCTTCTGGGAGGACGCCAGCCCAGGCCAGGTCACCCGGCTTGGCCAGCAGAACACAGAGTAGATTTTGGTCCCGTTTGTTCCCCAGTGGGGTATCTATCCTTGTGCAGGGCACAAGCCTACATGGTGGCTCTGGTCATATCATTAGAAAATAGACAGAAATGGGCTGCACACCAGAATGAATGAATTGAATTGAAAGGGAGGAGTGATGGTGGAAAAAAAAACAAGTCAATTCATTTAGACTGGTAGAACCAGAACCACTGTGTAGTACATCCAAACGGTTAAAATTCCCTGGAAGATGTTACATAATCCTATCATGGTGTTTATTTATGGAAATCTATTTTAAAAATTTTATGTAATACTGCACAGTCTGTTTGCATGATGCCTTGTACGTAGTAGCAACTCAGTAAATACTTTTTGAATGAACTAGTATAGTATTTTAATTAGCTAGTCTTCATGTACTGGTACAAAAGAACAGTGTCATCTTACAGCTGAAGTCATAGAGGGGAAATATCCCACTCAAGATCATATAACATTCCAGGTACTCAGGATGAATGGTTTGAGGACTGGTCTGAATTCTTCAAAGGTTTCAGCTGTATTAACATTCTCCATCTAATAAACTTTATCTTGTCATTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153029:ENST00000367580:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.187
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGGAGTTGGTGTTCTAGT
R:
AGGGAAGCGTTGTGTCATGAG
Band lengths:
355-1902
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains