HsaINT1023799 @ hg38
Intron Retention
Gene
ENSG00000205592 | MUC19
Description
mucin 19, oligomeric [Source:HGNC Symbol;Acc:HGNC:14362]
Coordinates
chr12:40563531-40565544:+
Coord C1 exon
chr12:40563531-40563560
Coord A exon
chr12:40563561-40565512
Coord C2 exon
chr12:40565513-40565544
Length
1952 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
TTTATCATTTATGTCAACGGTTT
3' ss Score
-0.71
Exon sequences
Seq C1 exon
AATGTCTAGCCTCACTTCCACCAGCTCCAG
Seq A exon
GTAATAATTCCACGACTTCAGAATTGTTCCACATTAATGGTTCCTCTTGTCAATCAAATTTCAGAGGTCACGCTAATAAAAGTCACTAGCCATGGAAATGTTATAAAATAGCAAAACATGTATTGGATTAACTTAGCTTTTATTCACCAAATAGTGAGTAATAGTTCATTTCCTCCTTCACAAACCAATGAAGCCAAACCAAACAAATATACCTTGTTACTTAGATCAAAGCAAGGTTTACCTACTAAATGTTTCATATAATTATGATACCTTAACCAAAATATTATCACTTGATAGTGAGCATCTTTTTAAACTAGATAATTCCAACTTGAGGGATGAGCTGTAGTAGAAAAAAAAATCCATTTAGCCAGAGATAAGTAATTTTAGAGAACTTTCAGTCCCTACCATTCTCAAGACAATGTGGTGTGCTTTGCAGTGAGCAAAAAAAAATTACTAAAAAATAATTCTCTGACCATAGTACATAGTGGGAGAAGGAAGGTCTTCAAAGACATAGGCAATTTTCATATCAGGCAGAAAATAAATTTCCAAGTAAAAGTATAAACTATGTATTATATATAGAGTGCATATTGTATGTCACTTGTATATTTTAAGGTATCCCCAAGAATTTCTTTTTTTAAATTTTATTATTATTATACTTTAAGTTTTAGGGTACATGTGCACTATGTGCAGGTTTGTTACATATGTATACATGTGCCATGTTGGTGTGCTGCACCCATTAACTCGTCATTTAGCATTAGGTATATCTAGGAATTTCTTTACAGTATTGGAATTGGAGAACACAAATAGACCAGTCCAGGGCATGTAAATGAGAGAAGTGAGACAAAGTTGAGAAGGTCAGTTTGAGTCACAATATGAGAGACCTCAAAAGCTAGAATGCTAGAATAAACTGTTTGTTTTACACAACTATAAGGGGCCATCAAAGTAGTAAATGAGATGAGAATTAGGCTTTAGAAAAATTACATTACCTCATTGGATCAGAAAGAGATATGAGTCAGAATAACTCCCTTAAAAAAGCCAGTAGAGTATGCTAGATCAAAACTTTAATAAGATCTTGGAGTGGCATTTTAGCAAGTAGAATAAGGAAAGGAAGAAATGAATGTGAGTGTAAAGATACAGGATTTGGCAGTAGATTTGACGCCAGTGCTAGAAGGAAGAAATCAAATGGCTCCTTGATTTTAAGCTTGAATGATTGAAAGTATAGTTCTATCCTTAGAGAAGGAAGCCAATCTAGAAGAGAAGCTGGTTTTGGGGGGAAGATGATAAAATATGTTGTGTGCACATCAAGTTTTGGGTTTCTATAGGTCTGCCAGGATTCTGTCTATAGGTTGAGAGAGAACTGGCTCCAAAGCTATGAGAGAGGTCTGGGCTGGAGCTGGGCATTTTAGAGCCATTCTTTTGATGTTATGGTGCACATTGTGGAGACAGAAGAAAGAATTAGAGCCAAAATGAGAGGCAGTAAGACAAACTGCCAGTGAAGACAAAAATTTCAGAGCATTAAATCTGAAGAAAGGAGAGCATTTTTCAAGAAGGTAAGAATGAAAAATGTCAACTATGGCACAGAAAAACTGAGAAAGGGCCCTTGGGTCTGGTAATTATGAAGCCATGGTGACTTGTAGGATTGGAAAAGCGGAAGTCAGACTGCAAAACAGTAAGTCAGTTAGTAGCCATAAGATTGATTGACCACTGCCTGGAGAAATTAAGAATTATCCTTTGCGGAGGATTGTAAAAATAGGATATGCCTGTTGGGAACAGTTTGCTTGAAGCAGGTGGACGTGATTTTATTCACCTTAAGGCAACATAAAATCTTCTATAATTCAGTCACTCTGAAATCCTAATGCCAATTACAGTACTGGCCACCTGGTGGTTATCTATAAATAACAGATGGTTATATTTTGCCAAATTTAATTACCATTTATCATTTATGTCAACGG
Seq C2 exon
TTTGTCACGGTCCATTGGGAGAAGAGAAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205592:ENST00000454784:165
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains