MmuINT1023703 @ mm10
Intron Retention
Gene
ENSMUSG00000044021 | Muc19
Description
mucin 19 [Source:MGI Symbol;Acc:MGI:2676278]
Coordinates
chr15:91926179-91927802:+
Coord C1 exon
chr15:91926179-91926208
Coord A exon
chr15:91926209-91927770
Coord C2 exon
chr15:91927771-91927802
Length
1562 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTATCACTTTCTGTTCACAGTGT
3' ss Score
9.32
Exon sequences
Seq C1 exon
AGTGTCCAGACTCACTCCCACCAACCCCAG
Seq A exon
GTGAGTGCACCCGACTCCAGAACTGTTCTATAGTGGTTGTTCTTCTTGTACATTTGGTATCTGCAGTCACTCCAGGATTTGACAGGCCACAGCATGTTTCAGAATAAGCTCAGTGCATGAAACTGCCTTTTCCTTGTCAAACAATGTATAATAGTTATTTTCTTGTCCACAAACAAATGCAGCCAGGCAATACATCTCAGTTCTCTTTCATAAATTTACCTATCTTGATCAGAGGTACTTAATGGCACTGCTCTCTTAACGGTGATCATTTAACAAACTATCCCATTCAGCTTTTGGGGATATTGTTCTGGGAGACAATTGCAGGTGTGCCTGAGTTTAATAACTTCTGAGAACTTAATTGAATTTCCACTACTTCTAAGATAATATAATGTATTTTGCAGTGAGCAATCAATAAAGAAATAGTTTTTACTTTATTTAGTGGGAAAGAAAAGATTTTAAAAATACAGTTTTCATTAGGGCAGTCAGTAAAATTCATTCTAAGGGGTAAATATGCATTCTGTGGAGAATGTAAGTCGCAGAAGTGGAATGTTATGGCAATAAGTAGACTATCACAGAGCTAGTAAATTAGAGGCCTGAGCTGAGTAAGAACGTAGCTTTAATATAGGAGACTTGGAAACCAGAATAAAGCGTTTATTTTAAAAGATGACTAGCATTTAAAACAGAACACAATTAGATAATTAGACATTAGGAAAACTGCTGTAGCTGTGGTGTAAGGAACTGACCAGACCAGAAAGGAATCTCAGCGGTTGAGTTGTTGGATGGATGAATTTGCCAAGAGTAAAGAAAGGAAAGATTTAAAGTGAGGGCGAGAGTAGAGGATTTGTAGGTACTCTGAATGACAGACTGCAATTAAGGAGCAGGGCTCCTAGGAACAATTTACTCTACAAGAGAAGTCTGTGCCCAAGGCAAGAAGACAGAGTCTGTCATGGCCATTTATGTGGGAGGTTCTTGCAGACCTGTATTCCTAGAGATAGAGCAGTGTTCTTGCTCATGAGTGTTGATGGTCTCAAATGCCTTAGAAGTCTGAGAGCCTTCCCCTCAGTGTTGGATGTCATGGAGAATAAGTCCCATTGAAAGACTAGAGACAAAGTGACAGAAGTAAGAAGAGCTTTGAGTATGGACAGAGTTCTCCCAATGTTCAATTTAAAGAATAAGTCACTTTTTTGTTTTTTTTTGCATGTGAAAGTTAATGTCACTTATGACAGGGAATTCAAATGAATAAGGACATTTGGCTCTTTGGATTTGCCAACGATACTATTTTGGTACTTATTGGATTGCAGAGACAGGAAGCAGTTTATATGACAGTGAGCAGTATAGTGTACACACACACACACACACACACACACACACACACACACTTAAAGCATTTTGCTGGGAGCAGGTAGGTGTGATTGATCCAACTTTCGATACCCCCAGTCGCCATAAGTATACCTTTAAAATCCCAGTGTCAATCACAGGAGCGCCCCCTGCTGGTTATCTATAAATTGCAAGTGGTTGTAATTTGCAGACTTTAATTAGAATTTATCACTTTCTGTTCACAG
Seq C2 exon
TGTGTCATGGTCCACTGGGAGAAGAGAAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044021:ENSMUST00000160242:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types