HsaINT1023800 @ hg38
Intron Retention
Gene
ENSG00000205592 | MUC19
Description
mucin 19, oligomeric [Source:HGNC Symbol;Acc:HGNC:14362]
Coordinates
chr12:40565513-40565795:+
Coord C1 exon
chr12:40565513-40565544
Coord A exon
chr12:40565545-40565632
Coord C2 exon
chr12:40565633-40565795
Length
88 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
AACTTGGTTTGTTTATGTAGCCT
3' ss Score
4.19
Exon sequences
Seq C1 exon
TTTGTCACGGTCCATTGGGAGAAGAGAAATCT
Seq A exon
GTAAGTACACAGTTTTGCTCTACTTTAATCCAAATTTGCTCTCATTCCTGTATTTGAATAGAAGTCTAAACTTGGTTTGTTTATGTAG
Seq C2 exon
CCTGGAGACATATGGACTGCCAATTGCCACAGAGGTACCTGTACTGATGCAAAGACTATAGACTGTAAACCTGAGGAGTGCCCTTCTCCACCCACATGCAAAACCGGCGAGAAGCTTGTGAAGTTCCAATCTAATGACACCTGCTGTGAAATCGGATACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205592:ENST00000454784:166
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACGGTCCATTGGGAGAAGA
R:
CACAGCAGGTGTCATTAGATTGGA
Band lengths:
176-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains