HsaINT1023938 @ hg38
Intron Retention
Gene
ENSG00000215182 | MUC5AC
Description
mucin 5AC, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7515]
Coordinates
chr11:1168642-1169026:+
Coord C1 exon
chr11:1168642-1168779
Coord A exon
chr11:1168780-1168861
Coord C2 exon
chr11:1168862-1169026
Length
82 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
3' ss Seq
CCTGCCTAACCCGCCCCCAGGTC
3' ss Score
9.27
Exon sequences
Seq C1 exon
CCAACGTCACCATCTTCAGACCCTCAACCTTCTTCATCATCGCCCAGACCAGCCTGGGCCTGCAGCTGAACCTGCAGCTGGTGCCCACCATGCAGCTGTTCATGCAGCTGGCGCCCAAGCTCCGTGGGCAGACCTGCG
Seq A exon
GTAAGAGGGCTGCCTTCTGGGCTTGGAGCCCACCCACTCTGGCCAGGGCGCATGGTCCTCAACCTGCCTAACCCGCCCCCAG
Seq C2 exon
GTCTCTGTGGGAACTTCAACAGCATCCAGGCCGATGACTTCCGGACCCTCAGTGGGGTGGTGGAGGCCACCGCTGCGGCCTTCTTCAACACCTTCAAGACCCAGGCCGCCTGCCCCAACATCAGGAACAGCTTCGAGGACCCCTGCTCTCTGAGCGTGGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215182:ENST00000621226:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(29.7=100)
A:
NA
C2:
PF0009420=VWD=PD(12.3=33.9),PF087426=C8=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCACCATCTTCAGACCCT
R:
GGCCTGGATGCTGTTGAAGTT
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains