DreINT0005232 @ danRer10
Intron Retention
Gene
ENSDARG00000100621 | CABZ01080550.1
Description
NA
Coordinates
chr25:8203756-8204144:+
Coord C1 exon
chr25:8203756-8203893
Coord A exon
chr25:8203894-8203979
Coord C2 exon
chr25:8203980-8204144
Length
86 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
3' ss Seq
TAATGTGTGCTTCTGCACAGGCC
3' ss Score
7.6
Exon sequences
Seq C1 exon
CTGACTTCACAGTGTTCAGGCCGTCATCTTTTCACATCATACTTCAGACTGTCTTTGGGCTGCAGGTGCAGGTACAGCTGGTTCCTCTCATGCAGGTGTACATCACTGTGGATCAGAGCTTCCAGGGCAAGACTTGTG
Seq A exon
GTGAGAACTCTTTCGTAAGAAACAAGTAGTCCACCTGAACTTTAAAATAAACATCGCGATGGCCAATAATGTGTGCTTCTGCACAG
Seq C2 exon
GCCTTTGTGGAAATTTCAACAAAGTGCTGGCTGATGACCTGAAGACCCCTCAGGGGGTGGTGGAGGGTACAGCGGTTTCCTTCGCAAACGCCTGGAAAGCCCAGTCCAACTGCCCTGACCGTTCTGAGAGGATGGATGACCCCTGTTCCTACAGCAGTGATAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100621:ENSDART00000163826:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(29.7=100)
A:
NA
C2:
PF0009420=VWD=PD(12.3=33.9),PF087426=C8=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGTTCAGGCCGTCATCTT
R:
GTCTTCAGGTCATCAGCCAGC
Band lengths:
175-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]