RnoINT0000876 @ rn6
Intron Retention
Gene
ENSRNOG00000055996 | AABR07006032.1
Description
NA
Coordinates
chr1:214732313-214732693:+
Coord C1 exon
chr1:214732313-214732450
Coord A exon
chr1:214732451-214732528
Coord C2 exon
chr1:214732529-214732693
Length
78 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
3' ss Seq
ACCTGCTTTTCTGCTCCTAGGGC
3' ss Score
10.81
Exon sequences
Seq C1 exon
CCAACGCTACCTTCTTCCGGCCTTCAACCTTCTTCATCATTGGCCAGACCAACCTGGGTTTGCAGCTTGAGATCCAGCTGCATCCCATTATGCAGGTGTCCGTGCGCATAGCACCCGAGTTCAGGGGGCTAACCTCCG
Seq A exon
GTAAGAAGCCCTGACTGTGTCTGAGCCCATTCTGTCTTAGAGCCCACATGGGGCCTCAACCTGCTTTTCTGCTCCTAG
Seq C2 exon
GGCTCTGTGGTAATTTCAACAGTATGCAGGCCGATGACTTCCAGACCATCAGTGGGGTTGTGGAGGGCACAGCAGCTGCTTTCTTCAACACCTTCAAGACTCAGGCGGCTTGTCCCAATGTTAAGAATATCTTTGAGGACCCCTGCTCGCTCAGCGTGGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055996:ENSRNOT00000085159:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(29.5=100)
A:
NA
C2:
PF0009420=VWD=PD(12.2=33.9),PF087426=C8=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGCCTTCAACCTTCTTCAT
R:
AACCCCACTGATGGTCTGGAA
Band lengths:
181-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]