HsaINT0106726 @ hg19
Intron Retention
Gene
ENSG00000198788 | MUC2
Description
mucin 2, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7512]
Coordinates
chr11:1081421-1081813:+
Coord C1 exon
chr11:1081421-1081558
Coord A exon
chr11:1081559-1081648
Coord C2 exon
chr11:1081649-1081813
Length
90 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
ACCCTGTCCTGGCCCCTCAGGCC
3' ss Score
9.13
Exon sequences
Seq C1 exon
CGAGCTTCTCTGTCTTCCGCCCGTCTTCCTACCACATCATGGTGAGCATGGCCATTGGCGTCCGGCTGCAGGTGCAGCTGGCCCCAGTCATGCAACTCTTTGTGACACTGGACCAGGCCTCCCAGGGGCAGGTGCAGG
Seq A exon
GTAAGTGGCCCCACCGGGGTTGCCCCAACAAAGGCCCACAGGGGGGCCTGCTAGCCCCAGACTCTTCCCAACCCTGTCCTGGCCCCTCAG
Seq C2 exon
GCCTCTGCGGGAACTTCAACGGCCTGGAAGGTGACGACTTCAAGACGGCCAGCGGGCTGGTGGAGGCCACGGGGGCCGGCTTTGCCAACACCTGGAAGGCACAGTCAAGCTGCCATGACAAGCTGGACTGGTTGGACGATCCCTGCTCCCTGAACATCGAGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198788-MUC2:NM_002457:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(29.7=100)
A:
NA
C2:
PF0009420=VWD=PD(12.3=33.9),PF087426=C8=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCAGTCATGCAACTCTTT
R:
CTTGACTGTGCCTTCCAGGTG
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)