MmuINT0102331 @ mm9
Intron Retention
Gene
ENSMUSG00000025515 | Muc2
Description
mucin 2 [Source:MGI Symbol;Acc:MGI:1339364]
Coordinates
chr7:148881237-148881640:+
Coord C1 exon
chr7:148881237-148881374
Coord A exon
chr7:148881375-148881475
Coord C2 exon
chr7:148881476-148881640
Length
101 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
ATCCTGTCCTGGCCCTTTAGGTC
3' ss Score
9.69
Exon sequences
Seq C1 exon
CCAGCTTCTCCATCTTCCAACCCTCCTCCTACCACATTGTTGTGAACACGAAGTTCGGGCTGCGGCTGCAGATCCAGTTGCTTCCAGTCATGCAGCTTTTTGTGACTCTGGACCAGGCTGCCCAGGGACAGGTGCAGG
Seq A exon
GTGAGTGGCTCTCTCCTGTCTTGTCTCTGAAAAATCCCCATGAGGGTCCTATTTTTTTCCCCCACCCCCAGGTTCTTCCTAATCCTGTCCTGGCCCTTTAG
Seq C2 exon
GTCTCTGTGGAAACTTCAATGGCCTAGAGAGTGATGACTTCATGACGTCTGGTGGAATGGTGGAGGCCACCGGTGCTGGCTTCGCCAATACCTGGAAGGCCCAATCAAGCTGCCACGACAAGCTGGACTGGCTAGATGACCCCTGCTCCCTCAACATTGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025515-Muc2:NM_023566:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(29.7=100)
A:
NA
C2:
PF0009420=VWD=PD(12.3=33.9),PF087426=C8=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCTTCCAACCCTCCTCCT
R:
CTTGTCGTGGCAGCTTGATTG
Band lengths:
251-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: