GgaINT1001058 @ galGal4
Intron Retention
Description
NA
Coordinates
chr5:14357159-14357984:-
Coord C1 exon
chr5:14357850-14357984
Coord A exon
chr5:14357324-14357849
Coord C2 exon
chr5:14357159-14357323
Length
526 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
3' ss Seq
AATGTTTACTTTTTTGATAGGTC
3' ss Score
8.07
Exon sequences
Seq C1 exon
CTAGCTTCTCAGTTTTCAAGCCATCTTCTTACTACCTCATTGTACATACTTCTTTTGGGCTTCAGCTGCAGATTCAGTTGTCTCCAGTCATGCAGCTGTTTGTGACAGCGGATCAGTCAGTCCAGGACATTCAAG
Seq A exon
GCAAGTGTCCACTGAAACAGGAAGCAAAGCCATGCATTTCCACAGCTGTCAAGTCATATATTCTTTACATGGGTGGTAATTCATAGACTTACATAATGGTTTAAGTTTGAAAGGACCATGAAGTTCATCTAGTTTCACCCACCTGCAATGGCAGGGACACCTTCCCCTAGATTACATTGGCTAGAGCCCCAGCTAGCCTGGCCTTGACCACTTCTAGGGATGGGAAATTCAGAACTTTTCTGAGCAACCTACTTCAGTGCCTCGCAACTCTTATGGTGAAGAATTTCTTCTTAATATCAGACTATGGGGATGATCTCCTGAGGCAAAGATACCATCATGAAGGCTATTCATCTTCAAGATTTTAGATTTAAAAGGTCTCCTAAACCTTCAGTACTTACAGTAAGCATCAGTGTTGAGGTTGAAGAATCAGCAATATTAGCTTCTGTCTCCAGTGTTTATAATCAGTTGTCTCTTTCCCTTGCAGAATGAGAATGAGTAATAGGGAAAATGTTTACTTTTTTGATAG
Seq C2 exon
GTCTTTGTGGAAATTTTAATGGGATGGAAGGTGATGACTTTAAAACAACCAATGGATTGGTAGAAGCTACAGGATCTGCCTTTGCTAACACATGGAAAGCTCAGCCCACCTGTGCAGACCAAGCAGAAAAGCTGGAAGACCCATGCACTCTTAGCATTGAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006744:ENSGALT00000010869:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(29.2=100)
A:
NA
C2:
PF0009420=VWD=PD(12.3=33.9),PF087426=C8=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTCTCAGTTTTCAAGCCA
R:
TTCAATGCTAAGAGTGCATGGGT
Band lengths:
294-820
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]