HsaINT1023887 @ hg38
Intron Retention
Gene
ENSG00000198788 | MUC2
Description
mucin 2, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7512]
Coordinates
chr11:1083425-1083817:+
Coord C1 exon
chr11:1083425-1083562
Coord A exon
chr11:1083563-1083652
Coord C2 exon
chr11:1083653-1083817
Length
90 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
ACCCTGTCCTGGCCCCTCAGGCC
3' ss Score
9.13
Exon sequences
Seq C1 exon
CGAGCTTCTCTGTCTTCCGCCCGTCTTCCTACCACATCATGGTGAGCATGGCCATTGGCGTCCGGCTGCAGGTGCAGCTGGCCCCAGTCATGCAACTCTTTGTGACACTGGACCAGGCCTCCCAGGGGCAGGTGCAGG
Seq A exon
GTAAGTGGCCCCACCGGGGTTGCCCCAACAAAGGCCCACAGGGGGGCCTGCTAGCCCCAGACTCTTCCCAACCCTGTCCTGGCCCCTCAG
Seq C2 exon
GCCTCTGCGGGAACTTCAACGGCCTGGAAGGTGACGACTTCAAGACGGCCAGCGGGCTGGTGGAGGCCACGGGGGCCGGCTTTGCCAACACCTGGAAGGCACAGTCAACCTGCCATGACAAGCTGGACTGGTTGGACGATCCCTGCTCCCTGAACATCGAGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198788:ENST00000361558:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCAGTCATGCAACTCTTT
R:
CAGGTTGACTGTGCCTTCCAG
Band lengths:
170-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains