HsaINT1023945 @ hg38
Intron Retention
Gene
ENSG00000215182 | MUC5AC
Description
mucin 5AC, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7515]
Coordinates
chr11:1176151-1176665:+
Coord C1 exon
chr11:1176151-1176251
Coord A exon
chr11:1176252-1176513
Coord C2 exon
chr11:1176514-1176665
Length
262 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
3' ss Seq
GGTGTCTGCTGGCCCTGCAGTAC
3' ss Score
5.27
Exon sequences
Seq C1 exon
TGTGTGCTGCGCCCATGGTGTTCTTTGACTGCCGAAATGCCACGCCCGGGGACACAGGGGCTGGCTGTCAGAAGAGCTGCCACACACTGGACATGACCTGT
Seq A exon
GTAAGTCCCTGAGGACTCCCCAATGACAGACCCTCCATCTGCCCCTGCCTGCTAAGGGCGCCTGTCCCCAGGGTGGGCAGTGGTGAGCCTCTGACACATTAGGCCATGGGCTGCCCCACGTCCCAGAGGACCCCTGCCCATGCGCTCCCGGACTCCCTGGTCCTGTGGTCCCTCCACTGTGGTGTGGGTGAGCTGTCCCTGGGAGGACCTGGCAGGCCCCGTGCCCTGCCCCATCACTCAGTGGTGTCTGCTGGCCCTGCAG
Seq C2 exon
TACAGCCCCCAGTGTGTGCCTGGCTGCGTGTGCCCCGACGGGCTGGTGGCGGACGGCGAGGGCGGCTGCATCACTGCGGAGGACTGCCCCTGCGTGCACAATGAGGCCAGCTACCGGGCCGGCCAGACCATCCGGGTGGGCTGCAACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215182:ENST00000621226:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(51.6=94.1)
A:
NA
C2:
PF0182612=TIL=PD(45.2=54.9),PF0009313=VWC=PU(32.8=39.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCCATGGTGTTCTTTGACT
R:
CAGGTGTTGCAGCCCACC
Band lengths:
244-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains