HsaINT1023949 @ hg38
Intron Retention
Gene
ENSG00000215182 | MUC5AC
Description
mucin 5AC, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7515]
Coordinates
chr11:1177454-1178683:+
Coord C1 exon
chr11:1177454-1177633
Coord A exon
chr11:1177634-1178443
Coord C2 exon
chr11:1178444-1178683
Length
810 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CTCTCCCGGTGCCTCTGCAGGGC
3' ss Score
9.61
Exon sequences
Seq C1 exon
GGCTTCGAGCTGAAGCTAAGCCATGGGAAGGTGGAGGTGATCGGGACGGACGAGAGCCAGGAGGTGCCATACACCATCCGGCAGATGGGCATCTACCTGGTGGTGGACACCGACATTGGCCTGGTGCTGCTGTGGGACAAGAAGACCAGCATCTTCATCAACCTCAGCCCCGAGTTCAAG
Seq A exon
GTGAGACCACGCCCCTCGTCCAGGCCAGGGCCGGCTGGAAACCTGGAGGTGGGGAGCGTGGAACAGGTGGGCAGAGACGAGAGGCACAGAGACACAGAGAGAAACACAGAGATGGAAGCGGGGTGGGAAGTGGGGGGGACGGAGCCTTGGCAAGGGCAGCGGGTCAGGAGACTCCTTGGCTGGGTGTCAGTGTTCTGGGGCTAGAGCAAAGGCCCGCACCCTGGCGGATTTGCCCGCAGCCTGGACACTGGAAGTCCAGCAGGGCATCCACAGGGCCGAACTCTTTCAGAAGGCTCTGGGGGGCTCCTTTTGGCCCCTTGCATCTGCCGGGGTCCCCAGCGCTCCTTGGCTGTGGCCACATCACTTGGATCGCCGCCCCGTCTTCACGCAGCCTCCTCCCTGTGACTGGGTCTAAGTTTCCCTCTTTTATAAGGACACCAGGCATTGGATTCAGGACCCACTCATTACCTCAGTCTGCAAGACCCCATCTCCCAGTGAGGTGCCATGCATAGGCGCCGGGGTCAGGACTTAGGCGGGTCCTTCGAGGCCACGTCAGCTTCTTTTTCTCCAGGAGGGGCTTGCCTCTGGCTCCGGCCCTCGGTGCTCAGCTGCACTGCCCGGGGCCTCCCCAGGTGTAGCTGGAGGTGGGAAGGAGGAAGCAGCACCTGTGGTCGCTGTTGGCCACCTGGGTGGGAGGAGGCGGCCGCAGGGCAGGGTGGCCCTGGGTGGGAGGAGGCGGCCTAGGGGCAGGGTGGCTCTGGCCTTCTCGGTTTGCTGCACCCACCTCCACCTCTCCCGGTGCCTCTGCAG
Seq C2 exon
GGCAGGGTCTGCGGCCTGTGTGGGAACTTCGACGACATCGCCGTTAATGACTTTGCCACGCGGAGCCGGTCTGTGGTGGGGGACGTGCTGGAGTTTGGGAACAGCTGGAAGCTCTCCCCCTCCTGCCCAGATGCCCTGGCGCCCAAGGACCCCTGCACGGCCAACCCCTTCCGCAAGTCCTGGGCCCAGAAGCAGTGCAGCATCCTCCACGGCCCCACCTTCGCCGCCTGCCACGCACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215182:ENST00000621226:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(39.1=100)
A:
NA
C2:
PF0009420=VWD=PD(15.2=28.8),PF087426=C8=PU(28.0=26.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAGCTAAGCCATGGGAA
R:
GACTTGCGGAAGGGGTTGG
Band lengths:
351-1161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains