Special

HsaINT1023950 @ hg38

Intron Retention

Gene
ENSG00000215182 | MUC5AC
Description
mucin 5AC, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7515]
Coordinates
chr11:1178444-1179248:+
Coord C1 exon
chr11:1178444-1178683
Coord A exon
chr11:1178684-1179091
Coord C2 exon
chr11:1179092-1179248
Length
408 bp
Sequences
Splice sites
5' ss Seq
CACGTATGC
5' ss Score
4.23
3' ss Seq
TGAAGCCCCGTCTCCCTCAGGTG
3' ss Score
8.05
Exon sequences
Seq C1 exon
GGCAGGGTCTGCGGCCTGTGTGGGAACTTCGACGACATCGCCGTTAATGACTTTGCCACGCGGAGCCGGTCTGTGGTGGGGGACGTGCTGGAGTTTGGGAACAGCTGGAAGCTCTCCCCCTCCTGCCCAGATGCCCTGGCGCCCAAGGACCCCTGCACGGCCAACCCCTTCCGCAAGTCCTGGGCCCAGAAGCAGTGCAGCATCCTCCACGGCCCCACCTTCGCCGCCTGCCACGCACAC
Seq A exon
GTATGCTGGCCGGGGGGCGTTTCTCTGGGCCCAAGGGGGTCATGGTGACCCAAGGAGCCCCCAGAAGGGAGAAGGGAATGGGGTCTGGGAGACAGCTGCCAACCAAGGGTGTGGGCTGCTGGGACTGGCGCTGGTATGGACTCGCCTAGAGGGGCTGGGCTTCCAGCTCTGACACCTGTCAGCTATGGTTTCGGGGCCCTGGGGGGTGTTAACCCCAAGGGCTGCCGAGGAAGCCCCAGGCACTGTGGATATCCAGATGGGCCCAGCCGGCCACTTGGGGATGGGCATTCGCCCTCCCTGAGCTCCACTGGAACTCGGCCCCGGTCAATGTGCCAGCATGGGCCCGGTCCCCAAGAGCCCGCGGGGTGGTGGGGGGGTCCCTGGAACCTGAAGCCCCGTCTCCCTCAG
Seq C2 exon
GTGGAGCCGGCCAGGTACTACGAGGCCTGCGTGAACGACGCGTGCGCCTGCGACTCCGGGGGTGACTGCGAGTGCTTCTGCACGGCTGTGGCCGCCTACGCCCAGGCCTGCCATGAAGTAGGCCTGTGTGTGTCCTGGCGGACCCCGAGCATCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215182:ENST00000621226:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0009420=VWD=PD(15.2=28.8),PF087426=C8=PU(28.0=26.2)
A:
NA
C2:
PF087426=C8=FE(69.3=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
ALTERNATIVE
([1])
Zebrafish
(danRer10)
LOW PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACGACATCGCCGTTAATGA
R:
AGGACACACACAGGCCTACTT
Band lengths:
347-755
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains