BtaINT0096550 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008274 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr29:51395076-51396351:-
Coord C1 exon
chr29:51396112-51396351
Coord A exon
chr29:51395233-51396111
Coord C2 exon
chr29:51395076-51395232
Length
879 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CAGCCCCCGCCCTGCCCCAGGTC
3' ss Score
5.95
Exon sequences
Seq C1 exon
GGGAGGGTCTGCGGGCTGTGCGGGAACTTTGACGACAACGCCCTCAACGACTTCACCACGCGGAGCCAGTCTGTGGCGAGCGACGTGCTGGAGTTTGGCAACAGCTGGAAATTCTCCCCGTCGTGCCCGGACGCTCTGGCCCCCAGGGACCCCTGCACCACCAACCCGTACCGCAGGTCGTGGGCCCAGAAGCAGTGCAGCATCATCAACAGCGCCACCTTCAGCGCCTGCCGTTCTCAG
Seq A exon
GTGAGCAGGGTCGGGGTGGGACCTGCGTCTGGCCCGAGCTGGCCCTCTGAGGACGGCCTTGACCCCGACCGTTGTGCAGGGCACACTGTGTGGCCCTCCCCCGGGGCACTGCCGGCATCCCCAGCCCTGCCCCACGTTCCCTGACCACACTCAGCCTCACCCCCTGGAAGCGGGGCTGCAGGCTTCCTGGGCCCCAAGGGTCATCTCCTGTCCTCCTGCACATTCCCCGAGCTGCCCAGCCCCAACACGGACAAAGCTCAGGGCGCCTCCAGTCCAGCCCGGTCGCCTGAGAGCAGAGAATCGTGATGGCCTCGGGCCCTTCCCCACAGCCCTTCCTGCCACTTAGGGACCGCAGGGCACAGTCGCTGACGTGGATCTCGGGACCCGGACTGTGCACGGTGATGAGCAGGCAGCCGGTGGGACTGGTCTGCCCTGAGGCTGGCTGGCCTGTGTGAGGCCCTGAGGTCCTCCTGGATCACAGCCACCCCACACCCCCCCACCCCCGCCAGTGCCCTGCCCATTCGATCAGAAAATCCTTTGTGAAGTGACACAGCGGGCTCTGACTCAGATGGCACTGTCCATGGTGGCAAATGCAAGACTCGGGCTCCCTGGGTTCTGCTGCCTGGGAGGGAAGACCGGGGCAGGGCACCCCCTGGCCCTGCGGAGACAGGACAGGTCACAGCAGGGTCACGGGGGGGCTGGCCTGCAGCTAAGTGAGGCACCGAGCAGAGGCAAGGGAAGGGTGGCGGGGTGAGGCCAGAGAGGCAACAGGAGGCCCGAGGCGGCTGCTCAGACGGCAGTGCAGCTTGCTCGTGGGCAGCCGGCCGTCCAGGGGCTGCGGTTGGCGCCTCTCGCTGAGCAGCCCCCGCCCTGCCCCAG
Seq C2 exon
GTCGACCCCACCAGGTACTACGAGGCCTGCGTGAGCGACGCCTGCGCCTGCGACTCAGGGGGCGACTGCGAGTGTTTCTGCACGGCCGTGGCCGCCTACGCCCAGGCCTGCCACGAAGCGGGCGTGTGCGTGTCCTGGCGGACCCCGGACGTCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008274:ENSBTAT00000010897:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(12.4=28.8),PF087426=C8=PU(28.0=26.2)
A:
NA
C2:
PF087426=C8=FE(69.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGTCTGCGGGCTGTG
R:
CGGCCGTGCAGAAACACTC
Band lengths:
326-1205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]