MmuINT0102464 @ mm9
Intron Retention
Gene
ENSMUSG00000066108 | Muc5b
Description
mucin 5, subtype B, tracheobronchial [Source:MGI Symbol;Acc:MGI:1921430]
Coordinates
chr7:149039077-149041557:+
Coord C1 exon
chr7:149039077-149039316
Coord A exon
chr7:149039317-149041400
Coord C2 exon
chr7:149041401-149041557
Length
2084 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
CTCTGGCGCCTCTGTTCCAGGTT
3' ss Score
8.94
Exon sequences
Seq C1 exon
GGCAGGGTCTGTGGCCTCTGTGGGAACTTTGACGACAATGCCATCAATGACTTCACCACACGCAGCCAGTCTGTGGTGGGCGATGTGCTGGAGTTTGGAAATAGCTGGAAGTTCTCCCCATCCTGCCCAGACGCCCCAGTTCCCAAGGACCCCTGCATTGCAAACCCTTACCGCAAGTCCTGGGCCCAGAAGAAGTGTAGCATCATCAACAGTGCAACGTTTGCCGCCTGCCACTCTCAG
Seq A exon
GTAGGACCTGGCCTTGGTTCACAGGACTTGCAGCTGCCTGCTTCTTCCTGGTAGGACTTGAGTCTTGCTGGACCAGGCACATAGCAGGCCCTTGAGGGCCATCCTGACCCAGTCAGAGCACATGTTCCTTGGCTCTGGGCTTTCAAGTTCTAGGTCTAAATCTCCTACAAGATGAGTGGGCATTCATGCATATATCCATCATGGAGTCATCTCCACTATTTTGGGACCAGCCCTTGACTACAGTCACAACCCGTGGCTCTCAGTGGAGTTCTGTCATCATCTTCCTGGGTGACCCCCAGACCTCTCCAGTGTACATCAGAAACACCAGCAGGATCCCCCCACAGGAGGTGGTAACTGGCTCTCATTAGACCTCCAAAGGCTAACCAAGACTCAAGTGTCCAGTTAGGAAAGCAGCTTCACCACACAGGCTCTCAGGCCATAACCAGAAAGTACTCAGGGATCATGGGTAGCCAGTGCTATTCATCTCATCACACCAACCTTGTGACAGGGGTCCCTCTGGTCACCATGCTCTCCATATCTTGGTTCACTGTGGCCTGAAAAGGCTAACTTGGAGGTGCACTTGGTGGCAAAAGCAAGAATTTGAGTCCACTCTGAGGTCTTCCAGTTGGCACAGTGTGAGTGGTAGGTCCTCTCTACCACAGAATTAGGCAGTTAACCACATGTCCCACAGCTGTGCCAGTCTGGTAGTTACCACCCACTACTTCAGTGGTTCGCAACCTGCAGGTTGTGACCCCCCTTTGGAAGTCACATAATAGACATCCTGCATATCAGACATGTATATTACAATTTATAACAAGCAAACTCAGAGTTATGAAGTAGCAATGAAATAATATGGCTGGGGTCACCACTCCACGAGGAATGGTCACAGCATTAGGAAGGTTGAGAACCAATGTTTGCAGGGGTCTGGAAGGTCAAGTGGTCTCTGGGAACCAACTCATTCAAATGGATGGGGGATAAAATGTGCAGTCCCTAAGCAATTCTCCACAGGAATGAGGAAGAAGGGTGGTCAGGGAGGGGTTCACACCAAAAAGCAAACCAGGGAGCCACCAGAGGTCATGGGCACAGCAATCCAGGGAACGATTCAGTTATGGAAAGGTAGACATAGGATGGAAGCCGGTGCACTGGAGCGAGAGTACAAGGACAGAATTGAGACCACAGTGCCCTGCCCTGTAGGTGTAAAACCTGCAGATCATACGACTAGATCAAGAAAAAGGACCCGCAGAGCATTAGTGAAGATGTACAGGTATGCAGGAACTCATGTGTGCAGGAAAGCAGGTGTGAAAGTGGGGCAGATACAGGCAGGCAGTTGTACAGGCAAGTATGCAGGGAGGCACACAGGCCGGCAGATGGACAGGTGAGTATCTGTACGGGTGCAGGTAGGCAGGTACACAGTGTTGTACAGGTGAGCATCTGTGTGAGCAGACAGGTGGTTGCACTTGTCGGCGGGAGGGAAAGCGCATAGGCCCAAAGACAGGAAGGATATACAAGTGGTTAGGAGGGTGAGTAAACACATGGACAGGTGTGCCAGTTCACGGGTAGGCAGATGCACTGGTGTGCATTCAGGCATGGGTGGGAAGATATACAGTTTCACAGGTGTGCAGGTGCACAAATGAACAGTTAGCTGTACAGGCAGGTGGGTATGTCAGTGTGCAGACAGACATATAAGCAGGTACACAAGTGGCTATATATATATATATAAAGCCATATGCATACCTATACAGATAGGTATACCTTTACAGATAGGTATACGTATTCAGGTATTCGGGCAGGTGTACAAGCTGCCGGGTGAGCAGGTGGAGGAGTACAGGCATATGGGTGTACAAACAGCGGGTTATGGGTATGCAGGTGTGCAAGTATGCAGTTATACTAGTGAACCAGAAAGGTGGTGCTGGACCATTCCCACTTAGAACACTCTGATAGCAGCCACAGTACCAACTCAGGATTCCCATAAGTGTGGGTTTGAACTACGACTAGCTCTATACCCTTCCCCACATTCAGCTGCCCTGTGACCTGGGTAGGCATTGCTGTCCTCCCTGAGTGGCACTCTGGCGCCTCTGTTCCAG
Seq C2 exon
GTTGACTCTACAAAATACTATGAAGCCTGTGTGCATGATGTGTGTGCCTGTGACTCAGGGGGTGACTGCGAGTGTTTCTGCACCGCTGTGGCCGCCTATGCCCAGGCCTGCCGTGATGTGGGTGTGTGCTTGTCCTGGAGGACACCGGACATCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066108-Muc5b:NM_028801:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(15.2=28.8),PF087426=C8=PU(28.0=26.2)
A:
NA
C2:
PF087426=C8=FE(69.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: