GgaINT0058650 @ galGal4
Intron Retention
Description
NA
Coordinates
chr5:14097372-14099721:-
Coord C1 exon
chr5:14099629-14099721
Coord A exon
chr5:14097402-14099628
Coord C2 exon
chr5:14097372-14097401
Length
2227 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCA
5' ss Score
7.33
3' ss Seq
TAACTTTGCATAATCTTTAGTTT
3' ss Score
4.67
Exon sequences
Seq C1 exon
GACCCATGCTCTACCAACCCTTATCGAAAGTCCTGGTCAGAGAAGCAGTGTAGCATCATCAACAGCAATGTCTTTGCTGCCTGTCACTCACAG
Seq A exon
GTATCAGCAGAGCAGGAGTTCACTCTGTGAAAACTAGGCCTGAGTGCTACTGAATCTAAAATGAAGTCTATCTTCATACACTTTGCCACATACATCTAATTCAGTAGAGAGCATGTTTCACTTTGAATTGTGTAACTTCAGTCTAAATCTTGTGCAATTGAACAGATTTATAGCTCCTACCTGTAAGAAATAGTAGGCTATATAGATTATAGAAAATGATACTAACTTATTGAGAGAGAACAATAATTTTGGAATTACTATATATTTTCATGTGGTGTAACTTGGGTAAAATATACCATGTAATGAACACAAATTCAGTGAAATAACATTTTGGGGTAGTAATGAAGCAGCATTAACTGACAGTACATACCAACAGTGCAGGATAGTTTTGTGCTCTTCCTATTACCTTAGTTCTTTCCACTGCTAGAGACCTTCAGGTATGGCTGCCTAATACGTCTTGGGAACATGAAGCTAGTCTTTCACTGGGACACAAGTCTGGATGTCTCAAACTATGTCAGTATGTGATTTGGATTTATTATCTGGCATTACCTCTGGTGTTTGACAGTGTATATAAACATAACAAAAGAAATAACTGATATAGGCCTTCCTTCTGAGATACTGATTTTAAGAAAATTAGTCTAGCGAAGTTGAGAAAACTTAGAAGGCAAAATATATAGTGTAATATTTCTTTCTTATGATAGGTTGAACCAGCAAAATATTATCAAGCATGTGTGACAGATGCTTGTGCCTGTGACTCCGGAGGAGACTGTGATTGCTTTTGTACAGCAGTAGCTGCCTATGCTCAAGCATGTAATGAAGTTGGTGTCTGTATAGCCTGGAGAACCCCATCAATCTGTCGTGAGTTTTATTTTATATACGCTTCTTCTGAAAATGTAGCAAAATATACAGCAATTCCTTGCTGATATTTTCAAACACATATTCTGTGTACCTCATGTACATGCATTATAAGTGCACTGTGTACTTTTCACAGGGTTTTGTTGGTCACACATTTCACCTATTCATTCAGTTTTCAAGGCTGTTCAAGGCAGCATGGTAGGGATCTGAACAGACATGGCTCAAAAGTTTTGGTTTATTTTCTGAACATGTTCAAATTTATGTTTCTCTTTAGCACTGTTCTGTGATTACTATAATCAACAAGGAGAATGTGAATGGCACTATAAGCCTTGTGGAGCCTCCTGTATGAAGACCTGTAGGAACCCAAGTGGGAAATGCCTCCATAATTTGCCAGGTTTAGAAGGTAAAAAGAGCTTGCAAGTACCCTTAAGTGGATAAATTTGTTTATAATCTTTTAAATAGTCTTTAATAGAGCCTGTTTTCTCCATCAGCTGCTTTTCCATCATTTAATTCTCTCCAACATCATTGCATCAACATGAATGGAAATAAAACACATATAAAAACATCTGGTGGCTAAGTCCTTGTAGGCTCTGCTAACATTAGTAATCTGCATTACTTCCTACAATTACTGGAAAAAAAAATAGTAGTAAAAATTATTGCTGTTGAAAACACAACCTGCAAACACATCCTGCACAAACAAAACTTTTTTTGAATTTCTCTCTTCACACTTCTTCAACCTTGTATATGCCCTTTTCCTTGCTTCAGGCTGCTACCCCAACTGCCCACCAGACAAGCCTTATTTTCACGAGGATCAGATGAAGTGTGTCAGTCTCTGTGACTGTTATGATAATGAAGACGGGAAGATATATATGCGGGATAAATGTCAATTATGGTAAGGCTTAACACACCAGCCCAGTTGTGTACAAGGAAAACTGACTAACCCAGTAATAGGAAATTGTGTGTTCCTGTTTCATGACACGATGAGTTTTATGCTGCCTGGCCTTTCTACCCAGTGCCAGCTTTCTTACTGTTTAGTACTATTAGGATCTATTACATTTTTTGTTCTGTTTAATTTGATTATAATTATATTGTAAATCCTCAGCAAAATGATACAATGACAACAGTAAGTACTTTGAGACTAAGCTTCCTCTATTTTCTATTGCTACGGCGGGAAAAAATATCATTTCAGAAGTATACATATCTAATAAGGAGCCTGCTTCCAAGGATTTTATTACATTCTTATACTGCTTGTAGTATTTAGACTCTCCTTTCTTAACGTGGGTTTTTTTTTTTTTAGTATAAAAACAAGCGAAAGAAAAGTTATACATGGCTTTCCTTAAAACTTGCACTTGTAACTTTGCATAATCTTTAG
Seq C2 exon
TTTCACTTTATATATAAGCTTGGGTTTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006740:ENSGALT00000010867:60
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]