RnoINT0095724 @ rn6
Intron Retention
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214792458-214795021:+
Coord C1 exon
chr1:214792458-214792697
Coord A exon
chr1:214792698-214794864
Coord C2 exon
chr1:214794865-214795021
Length
2167 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
CTTTGGTCCCTCCATTCCAGGTT
3' ss Score
10.21
Exon sequences
Seq C1 exon
GGTAGGGTCTGCGGCCTGTGTGGGAACTTTGATGACAATGCCATCAATGACTTCACCACACGCAGCCAGTCTGTGGTGGGTGATGTGCTGGAGTTTGGAAATAGCTGGAAGTTCTCCCCATCCTGCCCGGATGCCCCAGTTCCCAAGGATCCCTGCATCGCCAACCCTTACCGCAAGTCCTGGGCCCAGAAAAAATGTAGCATCATCAACAGCGCAACTTTCGCTGCCTGCCACTCTCAG
Seq A exon
GTAGGGCCTGGTCTTGGTTCGCAGGACTTGAAATTGCCTGCTTCTTCCTGGTAGGACTTGAGTCTTGCTGACCTAGGCACATAGCAGAACCTTGAGGGTCATCCTGACCCAGTCAGAGCACATGGCTCTGGGTTTTCAAGTTCTAGGCCTAAATCTACTGCAAGATGCGTGGGCATTCATGCATATATCCCCATCATGGAGTCATCTCCACTATTTTGGGAGCAGCCCTTCACTACAGCCACCATCCATGACTCTCAATGAATTTCCGTCATCATCTTCCTGGGTGACCCCCAGACCTGTCTAGGGTACATCAGAAACACCAGCGGGAAGTGGTAACTGGCTCTCATTAGATCTCCTAAGGCTACCTTCTATTTCTACAACCAAGACTCAAGTGTCCAGCTAGGAAAGGAGCTTCACAACTCAGGCTTTCAGGCCATGACCAGAAAGTGCTCATGGATCATGGGCAGCCAGTGCTACTCACCTGTGCTGAGCACCTCAGGCCACCACACCAACCTTGTGAGCAGGTGGACAGGGGTCCCTCTGGTTACCATGCTCTTCATATCTTGGTTCACTGTGGCCTGACAAGGCTAACTCGGAGGTGTCCTTGTTGGCAAGAGCAGGAACCTAAGTCCATTCCTGGGTCTTTCAGTTGGCACAGTGTGAGTGGGAGGTGCTTTCCTCCACAGAATTAGACAGTTAACGACATGTCCCATGGCTGTGCCAGTCTGGACGTTAAAAAATGCTGAATAGGGACCACCCACTACTTCAGTGGTTCTTAACCTGCTGGTCCTGACCCCTTTGGGAGTCGCATAACATACATCCTGTACATCAGACATTTACATTACAATTTGTAACAAGCAAACTTACAGCCATTAAGTAGCAATGGAATAACATGGTTGGGGTCACCACACCGTGAAGAACTGTACTAAACGGTCACGGCATCAGGAAGGTTGAGAACCATTGCACTACTTCCTTGGAGCATGTCTGGAAGGTCAAGCAGTCTCTGGGAACCAACTCATTCAAATGGATGGGGGATAAAATTTGCTGTCTCTCAACAATTCTCCACAGGAATGAGGTCAGGGAGGGGCTCGCACCCAAAAGCAAACCAGGGAGCCACCAGAGGTCATGGGCACAGCAATCCAGGGAATAAGTCAGTTACGGGAAGGCAGACATAGGATGGAGGCCGGTGCACTGGGGCAAGAATACAAGACAGAAGTGCAGTGCTCTGCAGGTATAAAACCTGTGGATCATATGACTAGATCAAGTAAAAGGATCCGCCGAGCGTTAGTGAAGGTGCGCAGGTGTGCAGGTGCACAGGTGTGCAGATGCACAGGTGTGCAGGTGCTTGTGCGTGAAGGAAAGCAGGTGTGAAAGTGGGGCAGCTACAGGCGGTCAGTTATACTGCCTGTAGCAGTATAGTGAGTATGCAGGTGGGCACACAGGCAGGCAGATGGGCAGGTGAATACTTGTGTAGGTGCGGGTGGGGAGGTACACAGTGCCGTGCAGGTGAGCATCTGTGCAAACAGACAGGTGGATGGGTGCACGTATGGGCAGGAGGGAAAGTGCACAGGTCAGCAGGCAGGCAGATATGCAAGTGGTTAGGAGGGTAGGTGAACACACGAACAGGTGTGCAAGTTCATAGGTGGGCACTGGTGTACATCCAGGCGTGTGCATGGGTGGGAAGGTATGCGTTTTACAGGGGTGCAGGTGCTGTACAGGCAGTGAACATGTAGGTGTGCAGATAGATATATAAGCAGGTGCACAGGTAGCCAAACAGATAGGTATACAAGTGGCTCACCATATGTGTGCCATATGTATACCTATACAGTAGGTATGCCTATACAGATAGGTATATTATTCAGGTATTCAGGCAGGTGTACAAGCTGTCAGATGAGCAGGTATAGGAGCACGGGCATATGGGTGGACAAATGGCAGGTTATGGGTATGCAGGTGTGCAAATATGTAGTTATACTAGCGAGTCAGAAAGGTGGTGTCGAACCAGTCCCATTTGGAACACTGATAGCAGCCACAGTCCCAGATCAGACTTCCCATAAGTGTGGGTTTGAACTATGGCTAACTCTGCACCCTTCCTCCATGTTCAGCTGCCCCGTGACCTGGGTAGACATTGCTGTCCTCCCTGAGTGGTACTTTGGTCCCTCCATTCCAG
Seq C2 exon
GTTGACTCTACAAAATACTACGAAGCCTGTGTGCATGATGTGTGTGCCTGTGACTCAGGAGGTGACTGTGAGTGCTTCTGCACTGCCGTGGCCGCCTACGCCCAGGCCTGCCGTGATGTGGGTGTGTGCTTGTCCTGGAGGACTCCAGACATCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846:ENSRNOT00000028967:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(15.2=28.8),PF087426=C8=PU(28.0=26.2)
A:
NA
C2:
PF087426=C8=FE(69.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]