HsaINT1023961 @ hg38
Intron Retention
Gene
ENSG00000215182 | MUC5AC
Description
mucin 5AC, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7515]
Coordinates
chr11:1194487-1195279:+
Coord C1 exon
chr11:1194487-1194670
Coord A exon
chr11:1194671-1195011
Coord C2 exon
chr11:1195012-1195279
Length
341 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
CCCCCACCGCGTCTGCCCAGGCA
3' ss Score
6.27
Exon sequences
Seq C1 exon
ATCATCTTCAACAACAAGGTGGTCAGCCCCGGCTTCCGGAAAAACGGCATCGTGGTCTCGCGCATCGGCGTCAAGATGTACGCGACCATCCCGGAGCTGGGAGTCCAGGTCATGTTCTCCGGCCTCATCTTCTCCGTGGAGGTGCCCTTCAGCAAGTTTGCCAACAACACCGAGGGCCAGTGCG
Seq A exon
GTGAGGCCACAGGGCTCCCGGGCATCGTCTGGCATTCGCGGGGGCGGGGGTGCCGGGCAGGGGCGAGGCCACCACGTGCCGCGTGTGCCGGTGTCTCTGCTTTCTGGCTGCTCTGCTGAGTGCAGGCCACAGGCATGAGGCTTACGCCTGCCGGTACCTGCAGCTCCCCAGTACCATAGGGACTGTCCCAGGGTTGTTCTCGGGGGACAGTGAGGCACAGGCAGGGCCCGCTGCAGTTCACCAAGTTGTGACCCTGAGACACCAGGGTCCTGTCCCCCAGCTGGGGGTGGGGCCAGCCGGCTCTGCTGTCCAGCAGCCTGACCCCCACCGCGTCTGCCCAG
Seq C2 exon
GCACTTGCACCAACGACAGGAAGGATGAGTGCCGCACGCCTAGGGGGACGGTGGTCGCTTCCTGCTCCGAGATGTCCGGCCTCTGGAACGTGAGCATACCCGACCAGCCAGCCTGCCACCGGCCTCACCCGACGCCCACCACGGTCGGGCCCACCACAGTTGGGTCTACCACGGTCGGGCCCACCACAGTTGGGTCTACCACGGTCGGGCCCACCACACCGCCTGCTCCGTGCCTGCCATCACCCATCTGCCAGCTGATTCTGAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215182:ENST00000621226:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.400
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(38.1=100)
A:
NA
C2:
PF0009420=VWD=PD(10.0=17.8),PF087426=C8=PU(16.4=13.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGTTCTCCGGCCTCATCT
R:
TTGCTCAGAATCAGCTGGCAG
Band lengths:
343-684
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains