RnoINT0000897 @ rn6
Intron Retention
Gene
ENSRNOG00000058420 | AABR07006033.1
Description
NA
Coordinates
chr1:214749983-214750613:+
Coord C1 exon
chr1:214749983-214750166
Coord A exon
chr1:214750167-214750411
Coord C2 exon
chr1:214750412-214750613
Length
245 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGC
5' ss Score
8.99
3' ss Seq
CACCCCTGTCTTATCTGCAGGCA
3' ss Score
10.23
Exon sequences
Seq C1 exon
ATCATCTTCAACAACAAGGTCGTGAGTCCTGGCTTCCAGCAGAATGGCATTATCATCTCCCGTGTGGGTATCAAGATGTATGTCACCATCCAAGAGATTGGTGTCCAGGTCATGTTTTCAGGCCTCATCTTCTCAGTTGAGGTGCCCTTCAACTTGTTTGCCAACAACACGGAGGGCCAATGCG
Seq A exon
GTAAGCTCCACTCTGGATAGTGTAGCCTCCACATGGGCCTAGAGGGAGTTCAGACTGTGGACCACATGGTTCACATCTGTTGTTCCCTGGCGGCTTTGCTGTACACCGGGAACCAAGCTGACTTCTGGGGAAGCCAGATGCACAGGAAAGGGAGTGCAACACGATGCCAGTTCTGCTCCTCAACGGGAGTACACTGGGCACAGGTCTCCTGCTGCCCAGCTGACTCACCCCTGTCTTATCTGCAG
Seq C2 exon
GCACTTGTACCAATGACAAAAAGGATGAATGCCGCCTGCCTGGAGGTTCCATAGCCTCCTCTTGTTCTGAGATGTCCCTCCACTGGAAGGTGCCCAACCAGCCTTCCTGCCAAGGGCCTCCACCAACACCAACTTCAATGGTACCCAGGTCTACACCTACTCCGTGCTCACCATCGCCACTCTGTCAGCTCATCCTAAGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058420:ENSRNOT00000091110:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.147
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(38.1=100)
A:
NA
C2:
PF0009420=VWD=PD(10.0=23.5),PF087426=C8=PU(17.6=19.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATTATCATCTCCCGTGTGG
R:
AGCACGGAGTAGGTGTAGACC
Band lengths:
307-552
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]