DreINT0099056 @ danRer10
Intron Retention
Gene
ENSDARG00000070331 | muc5.1
Description
mucin 5.1, oligomeric mucus/gel-forming [Source:ZFIN;Acc:ZDB-GENE-120822-1]
Coordinates
chr25:8309915-8310829:+
Coord C1 exon
chr25:8309915-8310098
Coord A exon
chr25:8310099-8310645
Coord C2 exon
chr25:8310646-8310829
Length
547 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
ATTAAATGTCTGTTTATCAGGGG
3' ss Score
6.38
Exon sequences
Seq C1 exon
GTCTATGTTAATGATGATTTGAAACAACTAACTTACGTCAATAACAACTTCTTCATCACCACCTCTGGCATTGGAGTCATTTTGAACATCACTGAAATCAATGTCGAGATTACTGTGAATCATCAAGGCTTTGTGATCAATCTCCCATTCTCCTACTTCAGTGGTAATACAGAGGGGCAGTGTG
Seq A exon
GTGAGTACAGATCCGAGATCATTTCTATGAGATGTGCATTAAGCAAAATGAAGTTTCACAAACTAGTTTCGAGAGAAGCAAGTGATATAATTGAGTTGAGCTGTTCTTTCATCTGTAATCATTAGTAAGCCAATCCGATCATTCCAAACTCACTATAAATAGCCTGACTAGCATTACTCCCTTCGTTTTTTTAAGAATCCACCCCATTTCCTCCCTTACCAGGATGAGCTCTTGAGAACTACCTGATCTCAGACCCCCTTACCTGCTAATTGACCAGGCGGGAGCCCTGGGCTCAATTATCTCTGAGCTCAGGGTTCTCTCCCGGGACAGCATGCCAAACCTGTTATTAATATCAAGCAATATCTAAGTGTGAACTCGTGAAATACCATATGTGTGAGTGTAAATTTTATATTTACTAGTGCATCAAATTAATATGATTTTCCATACCTTCTTATATACTCGAATTTCAATAATACATTTATTTTGCAATGTAGCATTACTACTTCTCTACATCCAGTTTAAGCCAAATTAAATGTCTGTTTATCAG
Seq C2 exon
GGGTCTGCGACAACAATCGTACAAATGACTGCAGACGCCCTGATGGACAAATCGACAAATCGTGTGAGAACATGGCACAGCTTTGGATGGTTCCCCCAGGATGCCAGCCTCCTAAACCTATACCCAAGCCTACACCTCCTCCAGTTATCTGCAACCCCAGTATTTGTGAATACATCAAGGGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070331:ENSDART00000153708:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(39.4=100)
A:
NA
C2:
PF0009420=VWD=PD(10.3=25.8),PF087426=C8=PU(14.9=17.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTTGAAACAACTAACTTACGTCA
R:
TCGCCCTTGATGTATTCACAA
Band lengths:
354-901
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]