HsaINT0106752 @ hg19
Intron Retention
Gene
ENSG00000198788 | MUC2
Description
mucin 2, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7512]
Coordinates
chr11:1097182-1097917:+
Coord C1 exon
chr11:1097182-1097365
Coord A exon
chr11:1097366-1097688
Coord C2 exon
chr11:1097689-1097917
Length
323 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
GGCCTCTCTCACTGATACAGGCA
3' ss Score
6.93
Exon sequences
Seq C1 exon
GTGCAGGTGAACAGGCAGGCGGTGGCACTGCCCTACAAGAAGTACGGGCTGGAGGTGTACCAGTCTGGCATCAACTACGTGGTGGACATCCCCGAGCTGGGTGTCCTCGTCTCCTACAATGGCCTGTCCTTCTCCGTCAGGCTGCCCTACCACCGGTTTGGCAACAACACCAAGGGCCAGTGTG
Seq A exon
GTGAGTTCCGTGACCCCCATGGCCCCCGAGGCCCCCACGGCTCCCACCGTCCCCTGTGCCCCCATGTCCTGCCCCAGGGCGGGTGGCCAGGCCAGGCTGAGGCTGAGGCTGCGTGTAAACACCCATGGGCCTGGCTGTGGGCCTCTTGCCCCGCTGCTCGGGGCTGCTGTGGCCATCACCCGGGTTCAGTCTCTGTGAGGAGCCAACAGGAGGGGGCCTGGCCTGGTCTCTGCCCTCGGCCCTGGCTGGCCGGTCCTGGGCATCTGGGCTGGAGAAGGGCAGGGCTTACCCTGTCTGCAACGTGGCCTCTCTCACTGATACAG
Seq C2 exon
GCACCTGCACCAACACCACCTCCGACGACTGCATTCTGCCCAGCGGGGAGATCGTCTCCAACTGTGAGGCTGCGGCTGACCAGTGGCTGGTGAACGACCCCTCCAAGCCACACTGCCCCCACAGCAGCTCCACGACCAAGCGCCCGGCCGTCACTGTGCCCGGGGGCGGTAAAACGACCCCACACAAGGACTGCACCCCATCTCCCCTCTGCCAGCTCATCAAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198788-MUC2:NM_002457:36
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.198
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(39.9=100)
A:
NA
C2:
PF0009420=VWD=PD(10.1=20.8),PF087426=C8=PU(17.8=16.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATCAACTACGTGGTGGAC
R:
CTGTCCTTGATGAGCTGGCAG
Band lengths:
347-670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)