MmuINT0102352 @ mm10
Intron Retention
Gene
ENSMUSG00000025515 | Muc2
Description
mucin 2 [Source:MGI Symbol;Acc:MGI:1339364]
Coordinates
chr7:141747474-141748171:+
Coord C1 exon
chr7:141747474-141747657
Coord A exon
chr7:141747658-141747954
Coord C2 exon
chr7:141747955-141748171
Length
297 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
GGTGGCTTCTCTGCACACAGGCA
3' ss Score
6.32
Exon sequences
Seq C1 exon
GTACAGGTGAACAAGCAGTTAGTGGCTTTGCCCTACAAGAAGTATGGGCTGGAGGTATACGAGTCTGGCATCAACATTGTGGTGAACATCTCCAGGCTAGAAGCCAAGATCTCCTACAATGGCCTTTCTTTCTCCATCCGGCTGCCCTACAAACTGTTTGGCAACAACACAAAGGGCCAGTGTG
Seq A exon
GTGAGTCCCCACTCCTGGCACCTCTTTCCTTGGAGGGCAAGACTGGGTGTGAGCCCCTGTCACCCAGGGAGGGCAAGACTGGGTGTGAGCCCCTGTCAGTCGCCCGGATGAGGGTTATCTTTCCTCTGTGGACAGTCACTGTGGCAATGTCTTGTGTTTGGTCCCTGTAAGAAGGCAGCAGATGTTGCCTTGGCCTTGGCTTTGCTTTCAGTGTCCAACCAGTGGGACACACAGAGCCTGGACTGGAGAAGTGCCAGGGCTTGATGCTGGCCTGATAGGTGGCTTCTCTGCACACAG
Seq C2 exon
GCACCTGCACCAACAATACTGCAGATGACTGTATCCTGCCCAGTGGGAAGATCATCTCTGACTGTGAAATTGCTGCTGACGAGTGGTTGGTGAATGACCCCTCCAAGCCACACTGTCCCCACAAAGGCCTCACCACCAAGCGTCCGGCCACCACGACACCAGGGCTTTCGCTTAATAACTGCACTGTGTCTCCTGTCTGCCACCTCATCATGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025515:ENSMUST00000187945:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.066
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(38.4=100)
A:
NA
C2:
PF0009420=VWD=PD(10.7=23.3),PF087426=C8=PU(16.2=16.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTGAACATCTCCAGGCT
R:
AGACAGGAGACACAGTGCAGT
Band lengths:
305-602
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types