RnoINT0000854 @ rn6
Intron Retention
Gene
ENSRNOG00000046602 | AABR07006030.1
Description
NA
Coordinates
chr1:214685833-214686435:+
Coord C1 exon
chr1:214685833-214685958
Coord A exon
chr1:214685959-214686218
Coord C2 exon
chr1:214686219-214686435
Length
260 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
GGTTACTTCTCTGCACACAGGCA
3' ss Score
6.23
Exon sequences
Seq C1 exon
TCAGCTGTGGCATCAACTTTGTGGTGGACATCCCCAGGCTGGGTGCCCAGGTCTCCTACAATGGCCTGTCTTTCTCCATCCGGCTGCCTTACCACCTGTTTGGCAACAACACAAAGGGCCAATGTG
Seq A exon
GTGAGTGCCCCCTTCCCCTGCCTCTTTCCTTGGAGGGCAAGACTGGGTGTGAGCTTCTGTCACCCAGCTGGGGGTTCTCTATTCCTCTGTGGACAGTCACTGTGGCATTGTCTTGTGTTTGGTCCCTGTGAGAAGACAGCAGATGTTGGTTTGGCCTTCTTGGTTTTGCTTTCTGGCCTGACTAGTGGGACACACAGACTCTAGACCAGAGAAGGGCCAGGGCTCAATGCTGGCCTAATAGGTTACTTCTCTGCACACAG
Seq C2 exon
GCACCTGCACCAACAATACTGCTGATGACTGTATCCTACCCAGTGGGGAGATCATTTCTAACTGTGAAGTTGCTGCTGATGAGTGGTTGGTGAATGACCCGTCCAAGCCACACTGTCCCCACAAAGGCCTCACCACTAAGCGCCCAGCCATCACGACACCAGGACCTTTCCCTGAAAACTGCACTGTGTCTCCTGTCTGTCAGCTCATCATGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046602:ENSRNOT00000075002:52
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(26.4=100)
A:
NA
C2:
PF0009420=VWD=PD(10.1=21.9),PF087426=C8=PU(17.6=17.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGTGGTGGACATCCCCAG
R:
AGACAGGAGACACAGTGCAGT
Band lengths:
308-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]