HsaINT0106752 @ hg38
Intron Retention
Gene
ENSG00000198788 | MUC2
Description
mucin 2, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7512]
Coordinates
chr11:1103274-1104009:+
Coord C1 exon
chr11:1103274-1103457
Coord A exon
chr11:1103458-1103780
Coord C2 exon
chr11:1103781-1104009
Length
323 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
GGCCTCTCTCACTGATACAGGCA
3' ss Score
6.93
Exon sequences
Seq C1 exon
GTGCAGGTGAACAGGCAGGCGGTGGCACTGCCCTACAAGAAGTACGGGCTGGAGGTGTACCAGTCTGGCATCAACTACGTGGTGGACATCCCCGAGCTGGGTGTCCTCGTCTCCTACAATGGCCTGTCCTTCTCCGTCAGGCTGCCCTACCACCGGTTTGGCAACAACACCAAGGGCCAGTGTG
Seq A exon
GTGAGTTCCGTGACCCCCATGGCCCCCGAGGCCCCCACGGCTCCCACCGTCCCCTGTGCCCCCATGTCCTGCCCCAGGGCGGGTGGCCAGGCCAGGCTGAGGCTGAGGCTGCGTGTAAACACCCATGGGCCTGGCTGTGGGCCTCTTGCCCCGCTGCTCGGGGCTGCTGTGGCCATCACCCGGGTTCAGTCTCTGTGAGGAGCCAACAGGAGGGGGCCTGGCCTGGTCTCTGCCCTCGGCCCTGGCTGGCCGGTCCTGGGCATCTGGGCTGGAGAAGGGCAGGGCTTACCCTGTCTGCAACGTGGCCTCTCTCACTGATACAG
Seq C2 exon
GCACCTGCACCAACACCACCTCCGACGACTGCATTCTGCCCAGCGGGGAGATCGTCTCCAACTGTGAGGCTGCGGCTGACCAGTGGCTGGTGAACGACCCCTCCAAGCCACACTGCCCCCACAGCAGCTCCACGACCAAGCGCCCGGCCGTCACTGTGCCCGGGGGCGGTAAAACGACCCCACACAAGGACTGCACCCCATCTCCCCTCTGCCAGCTCATCAAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198788:ENST00000361558:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATCAACTACGTGGTGGAC
R:
CTGTCCTTGATGAGCTGGCAG
Band lengths:
347-670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development