RnoINT0095737 @ rn6
Intron Retention
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214804922-214805432:+
Coord C1 exon
chr1:214804922-214805108
Coord A exon
chr1:214805109-214805206
Coord C2 exon
chr1:214805207-214805432
Length
98 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
ATCCCTGCTCTACTCACCAGGTA
3' ss Score
7.68
Exon sequences
Seq C1 exon
ATTATATGGGACCAGATGTGGATAAGGTCGGGCTTCAGTAAGAATGGCGTGACCGTATCTTTGAGTGGGGCCACCACAATGAGTGTCAACATTTCCACCATTGGCGCCAGCATCACCTTTGATGGAAACATCTTCCAGATATGGTTGCCCTATAGATACTTCAGCAACAACACTGAGGGCCAGTGTG
Seq A exon
GTGAGTAGGCAGGACCTGGCTCATTCTTCCATAGTGGGGAAAGGATCAGGTCCATAGGAAATAACAGAAGCTGATGTGATCCCTGCTCTACTCACCAG
Seq C2 exon
GTACCTGCACAAACAGTCAGACAGACGACTGCCGCCGGCCTGATGGCACCATAGCTTCCGACTGCCAGGACATGGCCAAAGACTGGCTGGTGCCGGGGAACAACAACAGCGACTGCTTAGCTCAACCCAGCCCTTCCCCCAGCACCACTTCCCAGCCCCCAATGTCCAGCACACTGACCTCCACCACATGCCCCTCTGCGCCTCTCTGTGAGCTGATGTTGAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846:ENSRNOT00000028967:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.224
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(38.0=100)
A:
NA
C2:
PF0009420=VWD=PD(9.8=21.1),PF087426=C8=PU(17.6=17.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCATCACCTTTGATGGA
R:
CCAGTCTTTGGCCATGTCCTG
Band lengths:
168-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]