HsaINT1023975 @ hg38
Intron Retention
Gene
ENSG00000215182 | MUC5AC
Description
mucin 5AC, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7515]
Coordinates
chr11:1199855-1201138:+
Coord C1 exon
chr11:1199855-1199969
Coord A exon
chr11:1199970-1200437
Coord C2 exon
chr11:1200438-1201138
Length
468 bp
Sequences
Splice sites
5' ss Seq
CATGTACGT
5' ss Score
6.32
3' ss Seq
TGAGCAGCCCCTGCCCACAGGTA
3' ss Score
6.9
Exon sequences
Seq C1 exon
AGTCGACCTGTGCTGTGTACCATAGGAGCCTGATCATCCAGCAGCAGGGCTGCAGCTCCTCGGAGCCCGTGCGCCTGGCTTACTGCCGGGGGAACTGTGGGGACAGCTCTTCCAT
Seq A exon
GTACGTGCCTGGGCAGCAGGCAGGGAGACGCGATTGGCTGTGGGGTGCAGTCAGGGCCCCCAGGGCTCTAGGTGCCAGATAGACGAGGGGCAGGACCATGAGGGGCCAGGCAAAGGGCTCTGAGGGTGAGGCGGGAAAGGGGTCCTGAGATGGCAAGGGTGGGGCTGGGGTAACTACATCCCCAGAGCCTGTGTCGGCATCACGCTCTCCTGTTTACTGAGCTCCGCCAGGAACTTGCCGCAGCCGCCCCGAGTCTCCCTCCCTCCCATCAGCACGGAGCCGGGGTCGGCCCTGGTGGGACTGTTGGCGCCTGGGGAACTGGCAAAGGAGAGCTGGTTGTCAGACACTGGCAGCATGCCTCCAGGAGCAGGGAACACGATGAGGCCGCCCAGAGCTCGGCACGGCGCCGGCTTACGGCAGGAGGCTGGGGTGGCGCAGCAGCTGGTGCTGAGCAGCCCCTGCCCACAG
Seq C2 exon
GTACTCGCTCGAGGGCAACACGGTGGAGCACAGGTGCCAGTGCTGCCAGGAGCTGCGGACCTCGCTGAGGAATGTGACCCTGCACTGCACCGACGGCTCCAGCCGGGCCTTCAGCTACACCGAGGTGGAAGAGTGCGGCTGCATGGGCCGGCGGTGCCCTGCGCCGGGCGACACCCAGCACTCGGAGGAGGCGGAACCCGAGCCCAGCCAGGAGGCAGAGAGTGGGAGCTGGGAGAGAGGCGTCCCAGTGTCCCCCATGCACTGACCAGCACTGCCGCCCTCCTGACCTCCAAGGAGAACCTCCCATATGTCCTCTGAGCTCGGCTTCCAAGGCCAGTGGAACTTGTGCCCCTGTCCAGGCGGCTGCAGCTTTGAACACACTGTCCACGCCCGCTTTCTTGTGGAGGGTGTGGGCTATGGGTCACCTGCTGCCTGGAGGAGGGGCCCTTACCCACCCCGCCTGCAGCCACCTCTCAGGACCAGCCCCGGGGCTGGCCGAGCTCCTCTGGCCATGCATCCAGCCTGCTGTTCTGGGGACGTGAGCATCACCTGAGGGTCTCAGGAATGACGCTTGGACATGGTGATCAGCTGCCTGGTGGCTGCAGGAGGAAGAACCTCACTCCTACCTCAGCCCTCAGCCTGCGCTCCCCTCCTCAGTACACGGCCAATCTGTTGCATAAATACACTTGAGCATTTTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215182:ENST00000621226:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.341
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGTGGGGACAGCTCTTC
R:
AAGCCGAGCTCAGAGGACATA
Band lengths:
351-819
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains