MmuINT1023729 @ mm10
Intron Retention
Gene
ENSMUSG00000037974 | Muc5ac
Description
mucin 5, subtypes A and C, tracheobronchial/gastric [Source:MGI Symbol;Acc:MGI:104697]
Coordinates
chr7:141818029-141819231:+
Coord C1 exon
chr7:141818029-141818137
Coord A exon
chr7:141818138-141818603
Coord C2 exon
chr7:141818604-141819231
Length
466 bp
Sequences
Splice sites
5' ss Seq
CATGTATGT
5' ss Score
5.71
3' ss Seq
CTGAGCAGATCTACCCACAGGTA
3' ss Score
4.54
Exon sequences
Seq C1 exon
AATGTACGGTGCACCAAAGACAGCAGATCATCCGTCAGCAAAACTGCAGCTCTGAGGGCCCAGTGAGCATCTCCTACTGCCAAGGCAACTGCGGGGACAGCATCTCCAT
Seq A exon
GTATGTATGGGCCCCAGAGAGCCCAGGGAGTATTCAGAGATGGAGTTGGCGGCAGGGGTGGGATGGGGTGCAGGGCAGACAGGCAGAACCAGGAGGGTGAGAAAGAGGGTTCAGAGCTTCTAGACTGTTACTGATAACTCATGGATTCCAAGGTAGCATCCACAGGGTTCCAAGCTCCTTGGGCAGTACTGACTACTTTTAAAGCGGAACGTTTGTGGAAGTATCTCATCCAAGGGACTCAGCAGGGACCTGCTGGGCACCCAACTGTGGACTTAGGACACCTGGTGGCCAAGGGCAGCTGTAGCAGAAACAGTTGCCCCAGGGCAACTGGCAAATAAGCTGATAGGGTCTTGAACAAGGGTGACAAGGACCTCAGGAGCTTGGCACCGTGCCAGCTGGACACAGAACCTGTGGCATACTCAGGCAGCTCCCAGCAAGGCTGGGTGCTGAGCAGATCTACCCACAG
Seq C2 exon
GTACTCCCTGGAGGCCAACAAGGTAGAGCACACATGTGAGTGTTGCCAGGAGCTGCAAACCTCTCAGAGGAATGTGACTCTGCGCTGCGATGATGGCTCCAGTCAGACCTTCAGCTACACCCAGGTTGAGAAGTGTGGCTGCCTGGGCCAGCAGTGCCATGCTTTAGGGGACACAAGCCATGCAGAGTCCTCAGAACAAGAGTTCAAGTCCAAGGAAAGTGAGGAACATGGCCAGCAGTTGGCATTCAGGGTCAGCGAGGACATGCTTGGGCCTTTCCAGTAAACTGAATACTGCTGCTGTCCCAACCAAAAGGTCCTCCCGAGGCCAGAAAGTGGCTTGAATTCTACCTACCTGCCGCTTCCTCTTCAAGAGGGACATCGACCCCAGATGGTCTTGGAGGTAGGAGAGGCCCCTCTCCACTGATTAGGTGGAGACATGGTGGTCTCGGGCTCCTTTTGAAAGAACTTCATGATCACCCAAGGGTCCCATGAATGACAGTCACTTGGATGCAGGTATCATCTGCTTGGCCTCACTTTCACCTCAGACCTGCACCTATGACCCCCCCCCCAATCCAAGGAAATGACCAATATGTTTTATAAATATACTCGAGAGCATTTATGGATTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037974:ENSMUST00000155534:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.223
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACGGTGCACCAAAGACAG
R:
GCTGGCCATGTTCCTCACTTT
Band lengths:
343-809
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types