HsaINT1023977 @ hg38
Intron Retention
Gene
ENSG00000215182 | MUC5AC
Description
mucin 5AC, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7515]
Coordinates
chr11:1162955-1163991:+
Coord C1 exon
chr11:1162955-1163045
Coord A exon
chr11:1163046-1163881
Coord C2 exon
chr11:1163882-1163991
Length
836 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGG
5' ss Score
5.42
3' ss Seq
CGCCTCTGTGCTTGCCGCAGACA
3' ss Score
8.94
Exon sequences
Seq C1 exon
CTGGAGCTGGACACCAAATACGCCAACAAGACCTGTGGGCTCTGTGGGGACTTCAACGGGATGCCCGTGGTCAGCGAGCTCCTCTCCCACA
Seq A exon
GTAAGGCCCCACATCGCCCTCAGCCCCTTCCTCAGTGTCCCCTGGGGGCTCAGTGTTGTGTGCACACACACCCTCTGACACTCCGGGCACACACATGCACAGATACACGGATGCAGCTGCCCTCCCTCCTAGCACAGCACACACGTGCACACACGCGATCCCGCAACGCCGGCCTGTCTCAGGAGTGCAGGCAGGGAGCAAATCGCCCATTGGGCCCCTTGCTCTGTGTGGCTGCTCTGGGTGGCGACCCCTGACTGCACGCCCTCTCCTGAAATGACAGACCTGCCTCCTTCTTGGTCTTTGAGTCTCTGCCACCAGGCAGTGGCCTTGCAAATGTGACCTGCACCAGCCAAGGCCCCACTCCCTGCCTCCCCCTGCCAGGCCCATGAAGCCCCATACAAGCCCCGAGTACAGGGTGTCCCTCTGTGGGGAACTGAGTCTGCCTGGGTGTCCAGCAGCCCTTGGCAAGGCAGGCTCAGTGCTGGGGGGGCTGGGTTCTGTGGACTGGGAGGTGTTCAGGCTCCAGCCAGCCTGGCAGGAGGAGACCAGGGTCCTGGGTCAGTTGAGGCCTCAGCCGGCGGCACCCTGTGGCCCGGACACCAACCTCCTGGGCTGTTTCTCCCCATCATTCCAGACCCCCTGAGGGTCCCAGCAGCATGCATGGGGTGGCCAAGCGGGTGCAGTCAGGACAACTCAGGCATCCAGATGGGGCAGGAGCCACCGATGGCCCTTCTAACCCCACCCCAGGGACCCGGCCCTGGGGGCTCTGCTGCTCGGGTGCTGGGCTGACGGGTACCGGGACCTGCAGGCAGAGCCCGCCTCTGTGCTTGCCGCAG
Seq C2 exon
ACACCAAGCTGACACCCATGGAATTCGGGAACCTGCAGAAGATGGACGACCCCACGGACCAGTGTCAGGACCCTGTCCCTGAACCCCCGAGGAACTGCTCCACTGGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215182:ENST00000621226:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.351
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(19.9=93.5)
A:
NA
C2:
PF087426=C8=PU(5.2=10.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGGACACCAAATACGCC
R:
AAAGCCAGTGGAGCAGTTCCT
Band lengths:
198-1034
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains