MmuINT0102443 @ mm10
Intron Retention
Gene
ENSMUSG00000037974 | Muc5ac
Description
mucin 5, subtypes A and C, tracheobronchial/gastric [Source:MGI Symbol;Acc:MGI:104697]
Coordinates
chr7:141792014-141792859:+
Coord C1 exon
chr7:141792014-141792104
Coord A exon
chr7:141792105-141792749
Coord C2 exon
chr7:141792750-141792859
Length
645 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
CTGCTCTGGACTTCCTGCAGATG
3' ss Score
9.45
Exon sequences
Seq C1 exon
CTGGAGTTGGACACCAAATATACCAACAAGACTTGTGGTCTCTGTGGAGACTTCAACGGCAGTCCAAAATCCAACGAGTTCCTCTCCAACA
Seq A exon
GTAAGTCCTCCAGGCAATGCCCCGGAGGCCCTAAGAGACTTAATCTCCCAGTATTTCCGTCTATCTCTATGTGTATGCAAACAAAAGCTCACTCTCTCACACAAATTGCATGTGCCTGCTACTCACACAGGCACACATATACATGTAAGTTTCCCTCCCACAATCCCACATCCCATAAGTGCACACAGACACATCTGCACATATTTATACTTGTGTGCATGTACAAGCTTGGCACTCTGCTACACCTCACAAGTGCATAGCGGGAACAAGGTGCCTGGCAGAGCTCAGGTTCTTGATACCCCTGTTCTGGGGACACAGAACTTCACATGGAATTATCCTTGCTTCTCTCAGGCCTGAGAGGGTCACATTTCTTTACCACCATGTAGTGGAATCACAAATGTGGCTGTATCGTCCAGATATTTCCACACCTTATCCTCTTCCAGTCTCTCTAAGTCCCATATAAGCTGTGGGTGACAGAACCTATCTATGCATGTGTCTGCTCCTGTCGGGCGACGCTGTGTACAGGCTAGCAGGAATCATGGGACTACATGGACATTCTCAGTGGGGAAACCTTTGGGTTTGGCCATTGAGATGATGGGCTGAGAGCCTGGGACTGCAGACAGAGCTGCTCTGGACTTCCTGCAG
Seq C2 exon
ATGTTAGGCTGACACCCCTTGAGTTTGGGAACCTTCAGAAGATGGACGGCCCCACAGAGCAGTGCCAAGACCCCCTCCCTGTGCCCCAGAAGAACTGCTCCGCCAGATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037974:ENSMUST00000155534:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.081
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(20.3=100)
A:
NA
C2:
PF0009420=VWD=PD(0.7=2.7),PF087426=C8=PU(5.2=10.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTTGGACACCAAATATACCA
R:
GAGCAGTTCTTCTGGGGCAC
Band lengths:
190-835
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types