HsaINT1023990 @ hg38
Intron Retention
Gene
ENSG00000117983 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr11:1234529-1235223:+
Coord C1 exon
chr11:1234529-1234680
Coord A exon
chr11:1234681-1235084
Coord C2 exon
chr11:1235085-1235223
Length
404 bp
Sequences
Splice sites
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
3' ss Seq
ACCATTGTGGCCCCTTGCAGCAC
3' ss Score
8.21
Exon sequences
Seq C1 exon
TTCAGCACACACTGCGTGTCCGGCTGTGTCTGTCCCCCGGGGCTGGTGTCGGATGGGAGTGGGGGCTGCATTGCCGAGGAGGACTGCCCCTGTGTGCACAACGAGGCCACCTACAAGCCTGGAGAGACCATCAGGGTCGACTGCAACACCTG
Seq A exon
GTGGGTCGTGAGTCTCTCGGAGGCAGCAGGTGGGGAGGGCGGGGGCGGGGAGGGCAGCGGGTGGGGAGGCAGCGGGCAGGGAGGGCAGGGGGCGGGGAGGGCAGGGGGCCAGCTGGCCAGGGTGAGGTGGGGCCGTGGCAGGAGAGAGAGTTGCTAGGAAAGCCATGGGCCGTCCTGTGCGTCCTCTGGAAGGTGGCCCAGGGGCCGTGGTGCTACCAGGAGCCTGGTGGGGCTGCGTGCCCTGCATTCACAGTGGGGGACACCACTTCTTCCACGGAGGAGGGGTCAGGCTGGGCCTGGGGAGGCTGAGGCCCCGTGCTGACCTGCACAGGCCTGGGTGCCGGGTCTCAGGAAGGCCGGGAGAGCAGGCCCCTGTGAGCAGGCACCATTGTGGCCCCTTGCAG
Seq C2 exon
CACCTGCAGGAACCGGAGGTGGGAGTGCAGCCACCGGCTCTGCCTGGGCACCTGCGTGGCCTACGGGGATGGCCACTTCATCACCTTTGATGGCGATCGCTACAGCTTTGAAGGCAGCTGCGAGTACATCTTGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117983:ENST00000525715:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(45.2=54.9),PF0009313=VWC=PU(33.9=39.2)
A:
NA
C2:
PF0009313=VWC=PD(64.4=80.9),PF0009420=VWD=PU(18.8=59.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGCGTGTCCGGCTGT
R:
GCCAAGATGTACTCGCAGCTG
Band lengths:
278-682
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains