HsaINT1023994 @ hg38
Intron Retention
Gene
ENSG00000117983 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr11:1227031-1227398:+
Coord C1 exon
chr11:1227031-1227145
Coord A exon
chr11:1227146-1227307
Coord C2 exon
chr11:1227308-1227398
Length
162 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
CTGCCCCTCCCCACTCTCAGCTG
3' ss Score
8.35
Exon sequences
Seq C1 exon
GGAGGAGCTGCCTTACAGCCGCACTGGCCTCCTGGTGGAGCAGAGCGGGGACTACATCAAGGTCAGCATCCGGCTGGTGCTGACATTCCTGTGGAACGGAGAGGACAGTGCCCTG
Seq A exon
GTGAGGAAGCCCCCTCGCCCCTTGCCCCTTCAGGCCTGGCCACAAAACCCCCACCGGGGGTCGAGGGATGCCTCCCTGGGCTTGGGGTCACGGGGCTTGGGGCATGTTGCCAGTGTGGGGATCAGAGGTCCTGAGGCTGGAGCTGCCCCTCCCCACTCTCAG
Seq C2 exon
CTGGAGCTGGATCCCAAATACGCCAACCAGACCTGTGGCCTGTGTGGGGACTTCAACGGCCTCCCGGCCTTCAACGAGTTCTATGCCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117983:ENST00000525715:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(25.7=100)
A:
NA
C2:
PF0009420=VWD=FE(20.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCTTACAGCCGCACT
R:
GGCATAGAACTCGTTGAAGGCC
Band lengths:
195-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains