RnoINT0095751 @ rn6
Intron Retention
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214781986-214782619:+
Coord C1 exon
chr1:214781986-214782100
Coord A exon
chr1:214782101-214782528
Coord C2 exon
chr1:214782529-214782619
Length
428 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
CTGCTCTGTCTCACCCTCAGCTG
3' ss Score
9.05
Exon sequences
Seq C1 exon
GGAGGAGCTGCCCTACAGCCGTGCAGGTCTTCTGATGGAGAAGACCAGTGGCTATGTGAAGATCAGCATCAGGCTAGTCCTCAACTTCCTGTGGAATGAAGAAGACAGTGTCCTG
Seq A exon
GTGAGGACATTCAGTCAGCTCCCTATAGCCCCGATAACCCTACACAGGTCTTAAACAAACTCTTGCCATCTCACATAGCTCCTCTCAATACTACAGATTCCTCAGAGCCCTCCATGGTCTCCCACAACTCCACATTCCCTTCCAGAATCCTCACGGTCTTCATAGACTTCCCTGGAAATTCCCCACAGATTTCACAAAACCCCAGTCACTCATAGCTACCTGCAGTTTTCACCAGTCCATATGGTCTCCACATATCCTCACAGCTCACCTGCAGCCCTTAGAGCTCCTGGACCTATTATAGGGACCCTGCAGAGTATTAGGGGAATACCCTTTCTAGTTCCCTGGGTGAGTGGGGTAGGAAGCTGCCAGGCAGGGCCTGGAGCCAGAGCAGAAGCCCTGAGGCTGAAGCTGCTCTGTCTCACCCTCAG
Seq C2 exon
CTGGAACTGGACTCCAAATACACCAACCAGACGTGTGGGCTGTGCGGTGACTTCAACGGGCTCCCAGCTGTCAATGAGTTCTACGCCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846:ENSRNOT00000028967:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(25.7=100)
A:
NA
C2:
PF0009420=VWD=FE(20.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCTACAGCCGTGCAG
R:
TGTGGGCGTAGAACTCATTGAC
Band lengths:
198-626
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]