DreINT0099154 @ danRer10
Intron Retention
Gene
ENSDARG00000099470 | muc5.3
Description
mucin 5.3 [Source:ZFIN;Acc:ZDB-GENE-040426-1562]
Coordinates
chr7:72082403-72083626:-
Coord C1 exon
chr7:72083512-72083626
Coord A exon
chr7:72082494-72083511
Coord C2 exon
chr7:72082403-72082493
Length
1018 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
TTATTTTTATTGATTTTCAGATC
3' ss Score
10.5
Exon sequences
Seq C1 exon
AGTAACACTGCCATACAGCAGCGCTGAAGTCTTCATCGAGAGGGTGACCTCTTATATCTCAATCAAGGCGGCTTTGGGACTAGTAGCCATGTGGAATGAAGATGACTCCTTCATG
Seq A exon
GTATGTCACACATATCAGCAATAGTGCCTACAGCACTCTTTAAAGATCAGAAATGTATGTGTTATTATGTAGATGGGTTGCAGTTTACAATAAGTCTCCATTGGTTAATGTTAGTTTATTTACTAACATTTATTTCAGTATTTATTCTTCTTTATTAATGTTAGTTATAAAGTCATTTTAGGTCTTGTTAACTCGCAGTGCATTAATTAGTTCACAACTTTTATTTTTGCATTAATAAATGTTGAACTACACTGTAAAAAATGAGCTGTGTTTATTTATGGTTGTGAATTGCATTATGGGATGTTGATCTCTGCTCTGTCCACTTTTGATGTTTAAAGTTAAACTCCACAGTTTAACAAAGTGACTTTAATCGACATTTTAGTCATTTTAAATAATATAGTGTATATAAAATAATATAAAGACAAATAAGTCTGTAAAATAACATATTGTCTGGATTGGTGTTGTATATTACGCTACAAAAACTTGCCAGTACATTTTCAATCACTTTAAACTATTGAAAATGTTAAAATGTTAAAGTCACTTTTTTTAATTTTCAAGGTTAAAAGTTGTTGGAAGAAATATCAAGATCCCATAATGCAATTCAAAAGCAGAAATAAATGAGGAAAAATAAAAACATGAATCACAAAATATGTAAAACTGTTAATTATAGATATTTCTACAGTGTAGTTGATTAATAAATGCTGTATTAAATTAAATTAAAACCTAAAAAATATTCAATTTAACTAATTGAACCTTATTGGATAACAATTTAAATATTTATGCTATTAACTACTGGCTTGTTACCTGCCTATTATTGTGATATTAACAGTTATTTAGTAATTATAAAGTTTGACTTATTCTACATCCCTAATTAAAGCCTAATCCAAACTATTACCTTACTGACTATTAATAAGCAGCTAATCAACAGTTCATTGAGCTAAAAGCATCAGTTGATGGTGTGTTTATAGTCTTATTGTAAAGTGTTATCAATATATGATTTATTTTTATTGATTTTCAG
Seq C2 exon
ATCAGGTTAGATGAAAAATACCGGAACCAAACGTGTGGACTGTGTGGGGACTTCAATGGCATCCCAGTTTACAATGAGTTTGTCAGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099470:ENSDART00000162367:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(25.9=100)
A:
NA
C2:
PF0009420=VWD=FE(20.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]