HsaINT1023976 @ hg38
Intron Retention
Gene
ENSG00000215182 | MUC5AC
Description
mucin 5AC, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7515]
Coordinates
chr11:1162532-1163045:+
Coord C1 exon
chr11:1162532-1162646
Coord A exon
chr11:1162647-1162954
Coord C2 exon
chr11:1162955-1163045
Length
308 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
TGATGTCTCTCCCTTTGCAGCTG
3' ss Score
12.1
Exon sequences
Seq C1 exon
GGTCCTGCTGCCCTTCAGCCAGTCTGGGGTCCTCATTCAGCAGAGCAGCAGCTACACCAAGGTGGAGGCCAGGCTGGGCCTTGTCCTCATGTGGAACCACGATGACAGCCTGCTG
Seq A exon
GTGAGGCTGGGTGGGGGTGTCCCGGTGTGCAACTCCAGCCCTCGAGGGCCGGCCTGCTCCCACAGCCTCTCCGGAGAGGGTAGAAGGTGCCCTGGGCCCAGTCAGGGTCAGACTCCACCCCACACAGCAGGCAAGAACAGGTGCCCAGACACCAATGGTGTCCCGGGGTCTGTGCCCCCAGGATGGAGACTGCTTTCGGGGGTGTCTCTTCCGTGGGCCTCGGCCCCTCCTCGGAAATCTCAGGCTCGAGCCTCATCTGTCCATCTGCCCCTGGTGGGGATGGGTGTCTGATGTCTCTCCCTTTGCAG
Seq C2 exon
CTGGAGCTGGACACCAAATACGCCAACAAGACCTGTGGGCTCTGTGGGGACTTCAACGGGATGCCCGTGGTCAGCGAGCTCCTCTCCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215182:ENST00000621226:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(26.0=100)
A:
NA
C2:
PF0009420=VWD=PD(19.9=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCTGCTGCCCTTCAG
R:
GAGAGGAGCTCGCTGACCA
Band lengths:
201-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains